Time-Course Data Analysis of Gene Expression Profiles Reveals purR Regulon Concerns in Organic Solvent Tolerance in Escherichia coli(Microbial Physiology and Biotechnology)

スポンサーリンク

概要

• 論文の詳細を見る

• A time-course gene-expression profile was generated for Escherichia coli TK31 when it was exposed to an organic solvent mixture, and classified by fuzzy adaptive resonance theory (Fuzzy ART). It was found that the purR regulon plays an important role in the organic solvent tolerance (OST) of E. coli.

• 社団法人日本生物工学会の論文
• 2005-01-25

著者

• Honda Hiroyuki

  Department of Biotechnology, School of Engineering, Nagoya University

• 本多 裕之

  名大院工・生物機能

• Kobayashi T

  School Of Bioscience And Biotechnology Chubu University

• KOBAYASHI Takeshi

  Department of Electrical Engineering, Faculty of Engineering Science, Osaka University

• Kobayasi T

  School Of Bioscience And Biotechnology Chubu University

• Shimizu Kazunori

  Department of Biotechnology, School of Engineering, Nagoya University

• Honda Hiroyuki

  Department Of Bioengineering Tokyo Institute Of Technology

• Shimizu Kazunori

  Department Of Biotechnology School Of Engineering Nagoya University

• HAYASHI SHUHEI

  Department of Pediatrics, Fukui Red Cross Hospital

• DOUKYU NORIYUKI

  Department of Biological Information, Graduate School of Bioscience and Biotechnology, Tokyo Institu

• Doukyu Noriyuki

  Department Of Bioengineering Faculty Of Bioscience And Biotechnology Tokyo Institute Of Technology

• Kobayashi T

  Graduate School Of Marine Science And Technology Tokyo University Of Marine Science And Technology

• Kobayashi Takeshi

  Department Of Biological Chemistry College Of Bioscience And Biotechnology Chubu University

• Kobayashi T

  Dep. Of Biological Mechanisms And Functions Graduate School Of Bioagricultural Sciences Nagoya Univ.

• Hayashi S

  Department Of Biotechnology School Of Engineering Nagoya University

• Hayashi Shuhei

  Department Of Biotechnology School Of Engineering Nagoya University

• Shimizu K

  Department Of Biotechnology School Of Engineering Nagoya University

• Kobayashi T

  Graduate School Of Engineering Science Osaka University

• Doukyu Noriyuki

  Department Of Biological Information Graduate School Of Bioscience And Biotechnology Tokyo Institute

• Honda Hiroyuki

  Department Of Anesthesia Niigata City General Hospital

関連論文

• Droplet-based gene expression analysis using a device with magnetic force-based-droplet-handling system(METHODS)
• Scale-up fermentation of echinocandin type antibiotic FR901379(BIOCHEMICAL ENGINEERING)
• Improvement of FR901379 production by mutant selection and medium optimization(BIOCHEMICAL ENGINEERING)
• Directed evolution of angiotensin II-inhibiting peptides using a microbead display(METHODS)
• Magnetic manipulation device for the optimization of cell processing conditions(MEDICAL BIOTECHNOLOGY)
• Practical cell labeling with magnetite cationic liposomes for cell manipulation(METHODS)
• Effect of Global Transcriptional Regulators Related to Carbohydrate Metabolism on Organic Solvent Tolerance in Escherichia coli(BIOCHEMICAL ENGINEERING)
• Production of Recombinant Chicken IgY-Fc and Evaluation of Its Transport Ability into Avian Egg Yolks
• Directed evolution of angiotensin II-inhibiting peptides using a microbead display
• AN-P24 Magnetic manipulation device for the optimization of cell processing(Section I Animal and Plant Cell Cultures)
• Screening of Epithelial Cell-Adhesive Peptides from Fibronectin Loop Region and Its Cell Specificity
• A Motif Detection and Classification Method for Peptide Sequences Using Genetic Programming(BIOINFORMATICS)
• Mag-Seeding of Rat Bone Marrow Stromal Cells into Porous Hydroxyapatite Scaffolds for Bone Tissue Engineering(CELL AND TISSUE ENGINEERING)
• Effective Cell-Seeding Technique Using Magnetite Nanoparticles and Magnetic Force onto Decellularized Blood Vessels for Vascular Tissue Engineering(CELL AND TISSUE ENGINEERING)
• Gene Expression Property of High-Density Three-Dimensional Tissue of HepG2 Cells Formed in Radial-Flow Bioreactor(BIOINFORMATICS)
• Three-Dimensional High-Density Culture of HepG2 Cells in a 5-ml Radial-Flow Bioreactor for Construction of Artificial Liver(Biochemical Engineering)
• Targeting Hyperthermia for Renal Cell Carcinoma Using Human MN Antigenspecific Magnetoliposomes
• Cancer DNA Microarray Analysis Considering Multi-subclass with Graph-based Clustering Method(BIOINFORMATICS)
• Identification of HLA-A24-Restricted Epitopes with High Affinities to Hsp70 Using Peptide Arrays(METHODS)
• Screening of Cell-Adhesive Peptide from the Human Laminin-5 α3 Chain Globular 2 and 3 Domains
• Screening of Anti-Tumor Peptide Vaccines with High Affinity to Hsp70 Using Peptide Array
• Peptide Informatics - Novel Method for Screening and Design of Biologically Active Peptides
• Peptide Array-Based Interaction Assay of Solid-Bound Peptides and Anchorage-Dependant Cells and Its Effectiveness in Cell-Adhesive Peptide Design (BIOINFORMATICS)
• Hidden Markov Model-Based Prediction of Antigenic Peptides That Interact with MHC Class II Molecules
• Drastic change in cell surface hydrophobicity of a new bacterial strain, Pseudomonas sp. TIS1-127, induced by growth temperature and its effects on the toluene-conversion rate(MICROBIAL PHYSIOLOGY AND BIOTECHNOLOGY)
• Prediction of Peptide Binding to Major Histocompatibility Complex Class II Molecules through Use of Boosted Fuzzy Classifier with SWEEP Operator Method(BIOINFORMATICS)
• Expression of a Thermostable Cellulase Gene from a Thermophilic Anaerobe in Saccharomyces cerevisiae
• Production of Ethanol in Repeated-Batch Fermentation with Membrane-Type Bioreactor
• Diversity of Cellulases Produced by a Thermophilic Anaerobe Strain NA10
• Molecular Cloning of Ruminococcus albus Cellulase Gene(Biological Chemistry)
• Incorporation of Capillary-Like Structures into Dermal Cell Sheets Constructed by Magnetic Force-Based Tissue Engineering
• Application of Ultra-Water-Repellent Surface to Cell Culture(CELL AND TISSUE ENGINEERING)
• Heat Immunotherapy Using Magnetic Nanoparticles and Dendritic Cells for T-Lymphoma(MEDICAL BIOTECHNOLOGY, Advances in Biomedical Science and Engineering)
• Screening of Cytokines to Enhance Vaccine Effects of Heat Shock Protein 70-Rich Tumor Cell Lysate(MEDICAL BIOTECHNOLOGY, Advances in Biomedical Science and Engineering)
• Medical Application of Functionalized Magnetic Nanoparticles(Advances in Biomedical Science and Engineering)
• Complete Regression of Mouse Mammary Carcinoma with a Size Greater than 15 mm by Frequent Repeated Hyperthermia Using Magnetite Nanoparticles
• Selective hyperthermia using magnetoliposomes to target cervical lymph node metastasis in a rabbit tongue tumor model
• Proliferation and Stratification of Keratinocyte on Cultured Amniotic Epithelial Cells for Tissue Engineering(MEDICAL BIOTECHNOLOGY)
• Tumor regression by combined immunotherapy and hyperthermia using magnetic nanoparticles in an experimental subcutaneous murine melanoma
• Transglutaminase-Mediated Gelatin Matrices Incorporating Cell Adhesion Factors as a Biomaterial for Tissue Engineering
• Radiation-Inducible TNF-α Gene Expression under Stress-Inducible Promoter gadd 153 for Cancer Therapy
• Bystander-Killing Effect and Cyclic Induction of TNF-α Gene under Heat-Inducible Promoter gadd 153
• Colominic Acid Production from Escherichia coli in a Fed-Batch Culture under the Control of Ammonium Ions Using an FIA System
• Effective Lactic Acid Production by Two-Stage Extractive Fermentation
• Time-Course Data Analysis of Gene Expression Profiles Reveals purR Regulon Concerns in Organic Solvent Tolerance in Escherichia coli(Microbial Physiology and Biotechnology)
• SELECTION CRITERIA OF OXYGEN CARRIERS UTILIZABLE FOR AUTOTROPHIC GROWTH IMPROVEMENT OF ALCALIGENES EUTROPHUS UNDER LOWERED OXYGEN PARTIAL PRESSURE
• ANALYSIS OF OXYGEN TRANSFER ENHANCEMENT BY OXYGEN CARRIER IN THE AUTOTROPHIC CULTIVATION OF ALCALIGENES EUTROPHUS UNDER LOW OXYGEN PARTIAL PRESSURE
• PHYTOHORMONE CONTROL FOR PLANT CELL CULTURE USING A BIOREACTOR EQUIPPED WITH IN-LINE FEEDING COLUMN
• A MODEL ANALYSIS OF MICROBIAL RETAINMENT PROCESS IN POROUS SUPPORT PARTICLES IN A FLUIDIZED-BED WASTEWATER TREATMENT REACTOR
• Preparation of L929 Cell Array by Magnetic Pin Holder Device for Single Cell Function Analysis
• OVERPRODUCTION OF FOREIGN GENE PRODUCT IN RECOMBINANT ESCHERICHIA COLI BY IN SITU ADSORPTION OF TRYPTOPHAN
• 4-S-Cysteaminylphenol-loaded magnetite cationic liposomes for combination therapy of hyperthermia with chemotherapy against malignant melanoma
• Prognostic models in patients with non-small-cell lung cancer using artificial neural networks in comparison with logistic regression
• Proposal of Pumpless, Valveless, and Flowless Miniaturized Reactor Using Magnetic Beads for the Portable Analysis Device
• Fabrication of Antigen Sensors Using Carbon Nanotube Field Effect Transistors
• Preparation of Tumor-Specific Magnetoliposomes and Their Application for Hyperthermia
• Fabrication of vertically-aligned CNT electrodes using plasma-enhanced CVD for chemical sensors
• Modeling of Consumers' Preferences for Regular Coffee Samples and Its Application to Product Design
• Determination of the Blending Ratio of Regular Coffee Samples by Information Technology
• Multiple fuzzy neural network system for outcome prediction and classification of 220 lymphoma patients on the basis of molecular profiling
• Selection of Causal Gene Sets for Lymphoma Prognostication from Expression Profiling and Construction of Prognostic Fuzzy Neural Network Models(MEDICAL BIOTECHNOLOGY)
• Fuzzy Neural Network Applied to Gene Expression Profiling for Predicting the Prognosis of Diffuse Large B-cell Lymphoma
• Inference of Common Genetic Network Using Fuzzy Adaptive Resonance Theory Associated Matrix Method(BIOINFORMATICS)
• Artificial Neural Network Predictive Model for Allergic Disease Using Single Nucleotide Polymorphisms Data
• Determination of Operating Conditions in Activated Sludge Process Using Fuzzy Neural Network and Genetic Algorithm
• Construction of COD Simulation Model for Activated Sludge Process by Recursive Fuzzy Neural Network
• Construction of COD Simulation Model for-Acivated Sludge Process by Fuzzy Neural Network
• Magnetic Characterization of Magnetite Particles for MR Contrast Agents
• A Preprocessing Method for Inferring Genetic Interaction from Gene Expression Data Using Boolean Algorithm(BIOINFORMATICS)
• Prognostic Predictor with Multiple Fuzzy Neural Models Using Expression Profiles from DNA Microarray for Metastases of Breast Cancer(BIOINFORMATICS)
• Proposal of Reliability Index in Search for Reliable Solutions of Reverse Calculation Based on Fuzzy Neural Network Modeling
• Evaluation of the Alzheimer-Type Dementia by Magnetic Resonance Imaging Using Fuzzy Neural Networks
• Simple and Rapid Cell Growth Assay Using Tetrazolium Violet Coloring Method for Screening of Organic Solvent Tolerant Bacteria
• Construction of an Electroencephalogram-Based Brain-Computer Interface Using an Artificial Neural Network(Welfare Engineering)
• Analysis of Organic Solvent Tolerance in Escherichia coli Using Gene Expression Profiles from DNA Microarrays
• A New Reliable Cancer Diagnosis Method Using Boosted Fuzzy Classifier with a SWEEP Operator Method
• Association Study between Apolipoprotein L and Schizophrenia by Exhaustive and Rule-Based Combination Analysis for Identification of Multilocus Interactions(BIOINFORMATICS)
• Proposal of New Gene Filtering Method, BagPART, for Gene Expression Analysis with Small Sample(BIOINFORMATICS)
• Classification of Intramural Metastases and Lymph Node Metastases of Esophageal Cancer from Gene Expression Based on Boosting and Projective Adaptive Resonance Theory(BIOINFORMATICS)
• Classification Method for Predicting the Development of Myocardial Infarction by Using the Interaction between Genetic and Environmental Factors
• Prediction of Occurrence of Heterocapsa circularisquama Red Tide by Means of Fuzzy Neural Network
• Human Antithrombin III variant Production from Recombinant BHK Cells in a Fed-Batch Culture with On-Line Control of Glucose and Glutamine Concentrations
• Performance of a Shaking Vessel-Type Bioreactor with a Current Pole
• Lymphoma Prognostication from Expression Profiling Using a Combination Method of Boosting and Projective Adaptive Resonance Theory
• Development of Rotating-Mesh Basket Type Bioreactor for Carrot Embryo Production in Immobilized Callus System
• Characterization on Heat Sterilization of a Novel Autoclave with a Turntable for Rotation
• Fuzzy Neural Network-Based Prediction of the Motif for MHC Class II Binding Peptides
• Enhanced Anthocyanin Production from Grape Callus in an Air-Lift Type Bioreactor Using a Viscous Additive-Supplemented Medium
• Enhanced and Prolonged Production of Plantlets Regenerated from Carrot Callus in a Viscous Additive-Supplemented Medium
• Lipase Production in Two-Step Fed-Batch Culture of Organic Solvent-Tolerant Pseudomonas aeruginosa LST-03
• Release of Embryogenic Carrot Cells with High Regeneration Protency from Immobilized Alginate Beads
• Prolonged loss of leg myogenic motor evoked potentials during thoracoabdominal aortic aneurysm repair, without postoperative paraplegia
• Development of Chitosan-Magnetite Aggregates Containing Nitrosomonas europaea Cells for Nitrification Enhancement
• PRODUCTION OF Fv FRAGMENT OF MONOCLONAL ANTIBODY FROM RECOMBINANT METHYLOTROPHIC YEAST, PICHIA PASTORIS
• Effective tPA Production by BHK Cells in Nutrients-Controlled Culture Using an On-Line HPLC Measuring System
• Enhancement of tPA Production under Hyperoxic Conditions by BHK Cells in Serum-Free and Serum-Containing Cultures
• Rapid Enzyme-Linked Immunosorbent Assay with Functional Magnetite Particles
• Development of Chitosan-Conjugated Magnetite for Magnetic Cell Separation
• Purification and Characterization of Recombinant Bovine Cathepsin C
• Effcient Production of Recombinant Bovine Cathepsin C by High Cell Density Culture of Methylotrophic Yeast Candida boidinii

もっと見る 閉じる

スポンサーリンク