Phylogenetic distribution of bacteria isolated from the floodwater of a Japanese paddy field(Soil Chemistry and Mineralogy)
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概要
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Two hundred and seventy five bacterial strains were isolated from the floodwater of a Japanese paddy field during rice cultivation and the cells from 205 of these strains were negative for Gram stain. One hundred and nineteen isolates negative for Gram stain were randomly chosen and subjected to sequencing of partial 16S rDNA to compare with DNA clones obtained from floodwater using the polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) method. The isolates belonged to α-, β-, and γ- Proteobacteria and the Cytophaga-Flavobacterium-Bacteroides (CFB) group as well as high-GC and low-GC Gram-positive bacteria, with proportions of 47.9, 7.6, 11.8, 13.4, 4.2 and 15.1%, respectively. Although their DNA sequences did not match the sequences of the DNA clones obtained from the floodwater of a neighboring paddy field, some isolates showed identical DNA sequences to DNA clones from rice straw in soil and rice roots. Phylogenetic distribution of the isolates was wider than that of the DNA clones obtained from the floodwater using the DGGE method. As the CFB cluster consisted exclusively of the isolates and the DNA clones obtained from the floodwater and from microcrustaceans, and the other isolates shared the α-, β- and γ-Proteobacterial clusters with the DNA clones associated with rice straw in soil, microcrustaceans, percolating water and rice roots, bacterial communities in the floodwater were estimated to include floodwater-specific members as well as members associated with other habitats in the paddy fields.
- 社団法人日本土壌肥料学会の論文
著者
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KIMURA Makoto
Graduate School of Bioagricultural Sciences, Nagoya University
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木村 真人
Laboratory Of Soil Biology And Chemistry School Of Agricultural Sciences Nagoya University
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Asakawa Susumu
Graduate School of Bioagricultural Sciences, Nagoya University
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TOYOTA KOKI
Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Tec
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Kimura Makoto
Nagoya Univ. Aichi Jpn
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Asakawa Susumu
Nagoya Univ. Nagoya Jpn
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Toyota K
Nagoya Univ. Nagoya Jpn
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Toyota K
Graduate School Ofbio-applications And Systems Engineering Tokyo University Of Agriculture And Techn
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Toyota Koki
Laboratory Of Soil Biology And Chemistry School Of Agricultural Sciences Nagoya University
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Toyota Koki
Graduate School Of Bioagricultural Sciences Nagoya University
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Okabe A
Graduate School Of Bioagricultural Sciences Nagoya University:(present Office)graduate School Of Bio
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Asakawa Susumu
Graduate School Of Bioagricultural Sciences Nagoya University
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Katoh Masahiko
Graduate School Of Bioagricultural Sciences Nagoya University:(present Address)zen-noh Agricultural
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Kimura M
Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi
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Kimura M
School Of Agriculture Nagoya University
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Okabe Akiko
Graduate School Of Bioagricultural Sciences Nagoya University:(present Office)graduate School Of Bio
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NAKAYAMA Natsuko
Graduate School of Bioagricultural Sciences, Nagoya University
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Nakayama Natsuko
Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi
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Nakayama Natsuko
Graduate School Of Bioagricultural Sciences Nagoya University
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Toyota Koki
Graduate School Of Bio-application And System Engineering Tokyo University Agriculture And Technolog
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Kimura Makoto
Graduate School Of Bioagricultural Sciences Nagoya University
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Kimura Makoto
Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi
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Kimura Makoto
Graduate School Of Agricultural Sciences Nagoya University
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