Analysis of Communities of Ammonia Oxidizers, Methanotrophs, and Methanogens Associated with Microcrustaceans in the Floodwater of a Rice Field Microcosm(Soil Biology)

スポンサーリンク

概要

• 論文の詳細を見る

• Ammonia oxidizers (AOB), methanotrophs (MOB), and methanogens that were associated with Moina sp., Mesocyclops sp., and Heterocypris sp. in the floodwater of a rice field microcosm were studied by using DGGE and sequence analysis with amoA /pmoA and methanogen-specific primer sets. Only one AOB and two MOB DGGE bands with the same mobility were detected, irrespective of the microcrustaceans. Effect of the incubation period was observed only in the AOB community associated with Moina sp., and an additional AOB clone appeared in the late period of incubation. Sequence analysis of the bands revealed that both of the closest relatives of the AOB clones belonged to uncultured ammonium monooxygenase genes of β-Proteobacteria, while those of the MOB clones to Methylomicrobium buryatense, an uncultured methanotroph bacterium, and Methylococcus capsulatus within type I methanotrophs belonging to γ-Proteobacteria. In contrast, no amplification products of 16S rDNA of the methanogenic archaea were obtained from any of the microcrustacean samples, indicating the absence or very small populations of methanogens.

• 社団法人日本土壌肥料学会の論文

著者

• KIMURA Makoto

  Graduate School of Bioagricultural Sciences, Nagoya University

• 木村 真人

  Laboratory Of Soil Biology And Chemistry School Of Agricultural Sciences Nagoya University

• Asakawa Susumu

  Graduate School of Bioagricultural Sciences, Nagoya University

• Kimura Makoto

  Nagoya Univ. Aichi Jpn

• Asakawa Susumu

  Graduate School Of Bioagricultural Sciences Nagoya University

• Asakawa S

  Kyushu National Agricultural Experiment Station

• MURASE Jun

  Graduate School of Bioagricultural Sciences, Nagoya University

• Niswati Ainin

  Graduate School of Bioagricultural Sciences, Nagoya University

• Katoh Masahiko

  Graduate School Of Bioagricultural Sciences Nagoya University:(present Address)zen-noh Agricultural

• Kimura M

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi

• Kimura M

  School Of Agriculture Nagoya University

• Murase Jun

  Graduate School Of Bioagricultural Sciences Nagoya University

• Murase J

  Graduate School Of Bioagricultural Sciences Nagoya University

• Niswati A

  Graduate School Of Bioagricultural Sciences Nagoya University:(present Address) Faculty Of Agricultu

• Niswati A

  Univ. Lampung Bandar Lampung Idn

• Murase J

  Nagoya Univ. Nagoya Jpn

• Niswati Ainin

  Graduate School Of Agricultural Sciences Nagoya University

• Kimura Makoto

  Graduate School Of Bioagricultural Sciences Nagoya University

• Kimura Makoto

  Graduate School Of Agricultural Sciences Nagoya University

• Murase Jun

  Graduate School of Bioagricultural Science, Nagoya University

関連論文

• The impact of nigorobuna crucian carp larvae/fry stocking and rice-straw application on the community structure of aquatic organisms in Japanese rice fields
• Bacterial Communities Associated with Nodal Roots of Rice Plants along with the Growth Stages : Estimation by PCR-DGGE and Sequence Analyses (Soil Biology)
• Methanogenic archaeal communities in paddy field soils in north-east China as evaluated by PCR-DGGE, sequencing and real-time PCR analyses(Soil Biology)
• Low diversity of T4-type bacteriophages in applied rice straw, plant residues and rice roots in Japanese rice soils : Estimation from major capsid gene (g23) composition(Soil Biology)
• Change in T4-type bacteriophage communities during the composting process of rice straw : Estimation from the major capsid gene (g23) sequences(Soil Biology)
• T4-type bacteriophage communities estimated from the major capsid genes (g23) in manganese nodules in Japanese paddy fields(Soil Biology)
• Methanogenic archaeal communities developed in paddy fields in the Kojima Bay polder, estimated by denaturing gradient gel electrophoresis, real-time PCR and sequencing analyses(Soil Biology)
• Bacterial communities in iron mottles in the plow pan layer in a Japanese rice field : Estimation using PCR-DGGE and sequencing analyses(Soil Biology)
• Bacterial communities in manganese nodules in rice field subsoils : Estimation using PCR-DGGE and sequencing analyses(Soil Biology)
• 6-7 Bacterial communities inhabiting manganese nodules in rice field subsoils estimated by PCR-DGGE of 16S rDNA
• Effect of Application of Rice Straw and Compost on the Bacterial Communities Associated with Moina sp. in the Floodwater of a Paddy Soil Microcosm : Estimation Based on DGGE Pattern and Sequence Analyses (Soil Biology)
• Bacterial Communities Responsible for the Decomposition of Rice Straw Compost in a Japanese Rice Paddy Field Estimated by DGGE Analysis of Amplified 16S rDNA and 16S rRNA Fragments (Soil Biology)
• Comparison of Bacterial Communities Associated with Microcrustaceans from the Floodwater of a Paddy Field Microcosm : Estimation Based on DGGE Pattern and Sequence Analyses (Soil Biology)
• Vertical Changes in Bacterial Communities in Percolating Water of a Japanese Paddy Field as Revealed by PCR-DGGE (Soil Biology)
• Microbial Communities Responsible for the Decomposition of Rice Straw Compost in a Japanese Rice Paddy Field Determined by Phospholipid Fatty Acid (PLFA) Analysis(Soil Biology)
• Nutrient Leaching from the Plow Layer by Water Percolation and Accumulation in the Subsoil in an Irrigated Paddy Field(Soil Physics)
• Bacterial Community Associated with Five Species of Microcrustaceans in the Floodwater of a Paddy Field Microcosm
• Succession and Phylogenetic Profile of Eukaryote in the Composting Process of Rice Straw Estimated by PCR-DGGE Analysis
• Analysis of communities of ammonia oxidizers, methanotrophs, and methanogens associated with microcrustaceans in the floodwater of a rice field microcosm
• Succession and Phylogenetic Profile of Methanogenic Archaeal Communities during the Composting Process of Rice Straw Estimated by PCR-DGGE Analysis(Soil Biology)
• Analysis of Communities of Ammonia Oxidizers, Methanotrophs, and Methanogens Associated with Microcrustaceans in the Floodwater of a Rice Field Microcosm(Soil Biology)
• Succession and Phylogenetic Composition of Bacterial Communities Responsible for the Composting Process of Rice Straw Estimated by PCR-DGGE Analysis (Soil Biology)
• Comparison of Microbial Communities in Percolating Water from Plow Layer and Subsoil Layer Estimated by Phospholipid Fatty Acid (PLFA) Analysis
• Succession of Microbiota Estimated by Phospholipid Fatty Acid Analysis and Changes in Organic Constituents during the Composting Process of Rice Straw
• Origin and Properties of Humus in the Subsoil of Irrigated Rice Paddles : IV. Effect of Water Percolation on the Binding Type of Humus in a Submerged Plow Layer Soil
• Comparison of Humus Composition in the Subsoil of Japanese Paddy and Upland Fields
• Origin and Properties of Humus in the Subsoil of Irrigated Rice Paddies : III. Changes in Binding Type of Humus in Submerged Plow Layer Soil
• Origin and Properties of Humus in the Subsoil of Irrigated Rice Paddies : II. Effects of Subsoil Constituents and Drainage on the Accumulation of Organic Matter Leached from the Plow Layer Soil
• Origin and Properties of Humus in the Subsoil of Irrigated Rice Paddies : I. Leaching of Organic Matter from Plow Layer Soil and Accumulation in Subsoil
• Sites and Processes of Nutrient Accumulation in the Subsoil through Water Percolation from the Plow Layer in a Submerged Paddy Soil Microcosm(Soil Physics)
• PA-22 Bacterial communities in paddy fields with long-term application of rice straw compost(Agricultural ecosystem,Poster presentation A)
• PA-19 Molecular ecological analyses of methanogenic archaeal 16S rRNA and mcrA genes in Japanese paddy field soils(Agricultural ecosystem,Poster presentation A)
• Molecular analyses reveal stability of bacterial communities in bulk soil of a Japanese paddy field : Estimation by denaturing gradient gel electrophoresis of 16S rRNA genes amplified from DNA accompanied with RNA(Soil Biology)
• B-20 Molecular Identification of Methane-Oxidizing Bacteria in Rice Paddy Field
• Comparison of Phospholipid Fatty Acid Composition in Percolating Water, Floodwater, and the Plow Layer Soil during the Rice Cultivation Period in a Japanese Paddy Field
• Changes in Molecular Structure of Biodegradable Plastics during Degradation in Soils Estimated by FT-IR and NMR
• Influence of Weather Conditions and Soil Properties on Degradation of Biodegradable Plastics in Soil
• Effect of elevated atmospheric CO_2 concentration on ammonia oxidizing bacteria communities inhabiting in rice roots(Soil Biology)
• Effect of Free-Air CO_2 Enrichment (FACE) on the Community Structure of Aquatic Organisms in Floodwater of a Japanese Paddy Field during the Flooding Period of Rice Cultivation (Soil Biology)
• Effect of Free-Air CO_2 Enrichment (FACE ) on Methanogenic Archaeal Communities Inhabiting Rice Roots in a Japanese Rice Field (Soil Biology)
• Comparison of Aquatic Organisms Communities between Paddy Fields under Rice-Duck (Aigamo) Farming and Paddy Fields under Conventional Farming(Soil Biology)
• Methane Emission from Plots with Differences in Fertilizer Application in Thai Paddy Fields
• Vertical changes in bacterial and archaeal communities with soil depth in Japanese paddy fields(Soil Biology)
• Molecular characterization of methane-oxidizing bacteria associated with rice straw decomposition in a rice field(Soil Biology)
• Succession and phylogenetic profile of eukaryotic communities in rice straw incorporated into a rice field : Estimation by PCR-DGGE and sequence analyses(Soil Biology)
• 6-14 Phylogenetic characterization of methane oxidizing bacteria inhabiting in rice straw incorporated into rice fields
• Succession and Phylogenetic Profile of Eubacterial Communities in Rice Straw Incorporated into a Rice Field : Estimation by PCR-DGGE Analysis (Soil Biology)
• Community Structure of Eukaryotes in Rice Roots Estimated by PCR-DGGE Pattern and Sequence Analyses(Soil Biology)
• Morphology, host range and phylogenetic diversity of Sphingomonas phages in the floodwater of a Japanese paddy field(Soil Biology)
• P6-5 Comparison of T4-type bacteriophage communities in paddy soils between Japan and Northeast China as estimated from major capsid gene (g23) sequences
• Ecology of viruses in soils : Past, present and future perspectives
• Abundance of bacteriophages of common heterotrophic bacteria in the floodwater of a Japanese paddy field(Soil Biology)
• Seasonal variations in the abundance of virus-like particles and bacteria in the floodwater of a Japanese paddy field(Soil Biology)
• Succession and phylogenetic composition of eubacterial communities in rice straw during decomposition on the surface of paddy field soil(Soil Biology)
• 6-16 Changes of Organic Constituents of Rice Straw and Succession of Responsible Microbiota During Composting Process : I. The community structure of microbiota estimated by Phospholipid Fatty Acids analysis
• Methane Production and Its Fate in Paddy Fields : V. Fate of Methane Remaining in Paddy Soil at Harvesting Stage
• Effect of Application of Rice Straw and Compost on the Community Structure of Bacteria Associated with Microcrustaceans in the Floodwater of a Paddy Field Microcosm
• Effect of Application of Rice Straw and Compost on the Community Structure of Bacteria Associated with Microcrustaceans in the Floodwater of a Paddy Field Microcosm (Soil Biology)
• Phospholipid Fatty Acid Composition of Microbiota in the Percolating Water from a Rice Paddy Microcosm
• Microbiota Responsible for the Decomposition of Rice Straw in a Submerged Paddy Soil Estimated from Phospholipid Fatty Acid Composition
• Molecular Analysis of β-Proteobacterial Ammonia Oxidizer Populations in Surface Layers of a Submerged Paddy Soil Microcosm (Soil Biology)
• Fate of Basal N and Growth of Crops Cultivated under Cassava-Based Intercropping System with Reference to K Application Rate
• Soil organic matter dynamics in lands continuously cultivated with maize and soybean in Heilongjiang Province, Northeast China : Estimation from natural ^C abundance(Soil Chemistry and Mineralogy)
• Phylogenetic distribution of bacteria isolated from the floodwater of a Japanese paddy field(Soil Chemistry and Mineralogy)
• STATE-SELECTIVE DIFFERENITIAL CROSS SECTIONS OF ELECTRON CAPTURE IN 10 MeV Ar^ -He COLLISIONS
• RECOIL ION MOMENTUM ANALYSES OF SINGLE-ELECTRON CAPTURE IN 10 MEV Ar^ -He COLLISIONS
• Molecular analysis of the ammonia oxidizing bacterial community in the surface soil layer of a Japanese paddy field(Soil Biology)
• Comparison of Phospholipid Fatty Acid Composition in Floodwater and Plow Layer Soil during the Rice Cultivation Period in a Japanese Paddy Field
• Seasonal Variations of Phospholipid Fatty Acid Composition in the Floodwater of a Japanese Paddy Field under a Long-Term Fertilizer Trial
• Biotic and abiotic methane releases from Lake Biwa sediment slurry
• Influence of Surface Printing Materials on the Degradability of Biodegradable Plastic Films in Soil (Soil Biology)
• Characterization of ammonia oxidizing bacteria associated with weeds in a Japanese paddy field using amoA gene fragments(Soil Biology)
• 6-15 Diversity of Ammonium Oxidizing Bacteria Associated with Weeds Growing in a Japanese Paddy Field
• Changes in the Community Structure of Aquatic Organisms after Midseason Drainage in the Floodwater of Japanese Paddy Fields (Soil Biology)
• Methanogenic Archaeal Communities in Rice Roots Grown in Flooded Soil Pots : Estimation by PCR-DGGE and Sequence Analyses(Soil Biology)
• Phylogenetic Study on CTO Primer-Amplified Ammonia-Oxidizing Bacteria and β-Proteobacteria Associated with Rice Roots Grown in a Flooded Paddy Soil (Soil Biology)
• Community Structure of Bacteria and Fungi Responsible for Rice Straw Decomposition in a Paddy Field Estimated by PCR-RFLP Analysis
• 6-3 Community structure of microbiota responsible for rice straw decomposition in a paddy field estimated by PCR-RFLP analysis
• Microscopic Observation of the Decomposition Process of Leaf Blade of Rice Straw and Colonizing Microorganisms in a Japanese Paddy Field Soil during the Cultivation Period of Paddy Rice
• Composition and structure of aquatic organism communities in various water conditions of a paddy field
• High frequency of phage-infected bacterial cells in a rice field soil in Japan(Soil Biology)
• Populations, Community Composition and Biomass of Aquatic Organisms in the Floodwater of Rice Fields and Effects of Field Management
• ELASTIC DIFFERENTIAL CROSS SECTIONS FOR e^-+N_2O SCATTERING
• ELASTIC DIFFERENTIAL CROSS SECTIONS FOR e^-+COS SCATTERING
• Carbon flow into ammonia-oxidizing bacteria and archaea during decomposition of ^C-labeled plant residues in soil(Soil biology)
• POSITRONIUM FORMATION CROSS-SECTION MEASUREMENT USING THE HYBRID METHOD
• TOTAL CROSS SECTION MEASUREMENTS FOR e^+ AND e^- SCATTERING BY C_4F_8 AND CHF_3 MOLECULES
• Bacterial communities that decompose root cap cells in an anaerobic soil : estimation by DNA-SIP method using rice plant callus cells
• 6-14 Bacterial communities incorporating carbon of root cap cells under upland soil conditions (DNA-SIP approach)
• T4-type bacteriophage communities in Japanese paddy fields estimated from major capsid gene (g23) sequences(The annal Meeting of the Society in 2008)
• Succession and phylogenetic profile of methanogenic archaeal communities during the composting process of rice straw estimated by PCR-DGGE analysis(The annual Meeting of the Society in 2004)
• Diversity of Cultivable Methane-Oxidizing Bacteria in Microsites of a Rice Paddy Field : Investigation by Cultivation Method and Fluorescence in situ Hybridization (FISH)
• Heterotrophic growth of cyanobacteria and phage-mediated microbial loop in soil : Examination by stable isotope probing (SIP) method(Soil biology)
• 塩入土壌学の時代背景と思想 : 没後50年を迎えて(2011年つくば大会シンポジウムの概要)
• Phylogenetic diversity of microturbellarians in Japanese rice paddy fields, with special attention to the genus Stenostomum(Soil Biology)
• Bacterial communities that decompose root cap cells in an anaerobic soil : estimation by DNA-SIP method using rice plant callus cells(Soil biology)
• Comparison of the frequency of visibly infected bacterial cells between the soil and the floodwater in two Japanese rice fields(Soil biology)
• Heterotrophic growth of cyanobacteria and phage-mediated microbial loop in soil : Examination by stable isotope probing (SIP) method
• Bacterial communities that decompose root cap cells in an anaerobic soil : estimation by DNA-SIP method using rice plant callus cells
• Phylogenetic diversity of microturbellarians in Japanese rice paddy fields, with special attention to the genus Stenostomum

もっと見る 閉じる

スポンサーリンク