Effect of elevated atmospheric CO_2 concentration on ammonia oxidizing bacteria communities inhabiting in rice roots(Soil Biology)

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概要

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• Recent research suggests that rice root characteristics, particularly growth, are altered by elevated atmospheric CO_2. Thus, microbial communities existing in or on rice roots could be greatly influenced by atmospheric CO_2 concentration. We investigated the effect of elevated atmospheric CO_2 on ammonia oxidizing bacteria (AOB) communities associated with rice roots using polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) and sequencing methods. Rice roots were collected from rice fields in a free-air CO_2 enrichment experiment at Shizukuishi, Japan. Differences in DGGE banding patterns among elevated atmospheric CO_2 and ambient treatments, young and old roots and rice growth stages were evident. Principal component analysis indicated that AOB communities in rice roots were influenced mainly by rice growth stage, although there was a tendency for communities from elevated CO_2 conditions to be different from communities under ambient conditions. Both Nitrosospira-like and Nitosomonas-like AOB sequences were detected in the rice roots tested. Close relatives of Nitrosospira sp. NpAV strain were likely to be the most dominant AOB inhabiting rice roots in the experimental paddy field. Although the DGGE band patterns showed a possible difference between ambient and elevated CO_2, under both CO_2 levels the bands that were sequenced were predominately Nitrosospira spp. with AmoA clusters 1 and 2.

• 社団法人日本土壌肥料学会の論文

著者

• 木村 真人

  Laboratory Of Soil Biology And Chemistry School Of Agricultural Sciences Nagoya University

• Asakawa Susumu

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi

• Asakawa Susumu

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bio-agricultural Sciences Nagoya Univers

• KIMURA Makoto

  Laboratory of Structural Biology, Graduate School of Systems Life Sciences, Kyushu University

• Kimura Makoto

  Nagoya Univ. Aichi Jpn

• Asakawa S

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi

• Asakawa S

  Kyushu National Agricultural Experiment Station

• Katoh Masahiko

  Graduate School Of Bioagricultural Sciences Nagoya University:(present Address)zen-noh Agricultural

• Kimura M

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi

• Kimura Makoto

  School Of Agriculture Nagoya University

• Kobayashi Kazuhiko

  Univ. Tokyo Tokyo Jpn

• BOWATTE Saman

  Laboratory of Soil Biology and Chemistry, Graduate School of Bio-Agricultural Sciences, Nagoya Unive

• OKADA Masumi

  Department of Biology and Environmental Sciences, National Agricultural Research Center for Tohoku R

• KOBAYASHI Kazuhiko

  Graduate School of Agricultural and Life Sciences, The University of Tokyo

• OKADA Masumi

  Tohoku National Agricultural Experiment Station

• Bowatte Saman

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bio-agricultural Sciences Nagoya Univers

• Kobayashi Kazuhiko

  Graduate School Of Agricultural And Life Sciences The University Of Tokyo

• Okada Masumi

  Department Of Biology And Environmental Sciences National Agricultural Research Center For Tohoku Re

• Kimura Makoto

  Laboratory Of Biochemistry Department Of Bioscience And Biotechnology Graduate School Faculty Of Agr

• Okada Masumi

  Department Of Biology And Environmental Sciences National Agricultural Research Center For Tohoku Re

• Kimura Makoto

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi

• Kimura Makoto

  Laboratory Of Biochemistry Department Of Bioscience And Biotechnology Faculty Of Agriculture Graduat

• Okada Masumi

  Department Of Biology And Environmental Sciences National Agricultural Research Center For Tohoku Re

• Kimura Makoto

  Laboratory Of Biochemistry Department Of Agricultural Chemistry Faculty And Graduate School Of Agric

• KIMURA Makoto

  Laboratory for Remediation Research, Plant Science Center, RIKEN

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