Bacterial communities in manganese nodules in rice field subsoils : Estimation using PCR-DGGE and sequencing analyses(Soil Biology)

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概要

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• The phylogenetic positions of bacterial communities in manganese (Mn) nodules from subsoils of two Japanese rice fields were estimated using polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) analysis followed by sequencing of 16S rDNA. The DGGE band patterns and sequencing analysis of characteristic DGGE bands revealed that the bacterial communities in Mn nodules were markedly different from those in the plow layer and subsoils. Three out of four common bands found in Mn nodules from two sites corresponded to Deltaproteobacteria and were characterized as sulfate-reducing and iron-reducing bacteria. The other DGGE bands of Mn nodules corresponded to sulfate and iron reducers (Deltaproteo-bacteria), methane-oxidizing bacteria (Gamma and Alphaproteobacteria), nitrite-oxidizing bacteria (Nitrospirae) and Actinobacteria. In addition, some DGGE bands of Mn nodules showed no clear affiliation to any known bacteria. The present study indicates that members involved in the reduction of Mn nodules dominate the bacterial communities in Mn nodules in rice field subsoils.

• 社団法人日本土壌肥料学会の論文

著者

• KIMURA Makoto

  Graduate School of Bioagricultural Sciences, Nagoya University

• 木村 真人

  Laboratory Of Soil Biology And Chemistry School Of Agricultural Sciences Nagoya University

• 木村 眞人

  名大農

• Asakawa Susumu

  Graduate School of Bioagricultural Sciences, Nagoya University

• Asakawa Susumu

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bio-agricultural Sciences Nagoya Univers

• Kimura Makoto

  Nagoya Univ. Aichi Jpn

• Asakawa Susumu

  Nagoya Univ. Nagoya Jpn

• Asakawa S

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi

• Asakawa Susumu

  Graduate School Of Bioagricultural Sciences Nagoya University

• Asakawa S

  Kyushu National Agricultural Experiment Station

• Cahyani V

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi

• Cahyani Vita

  名大院生命農学

• CAHYANI Vita

  Graduate School of Bioagricultural Sciences, Nagoya University

• MURASE Jun

  Graduate School of Bioagricultural Sciences, Nagoya University

• ISHIBASHI Eiji

  Agricultural Experiment Station, Okayama Prefectural General Agricultural Center

• Katoh Masahiko

  Graduate School Of Bioagricultural Sciences Nagoya University:(present Address)zen-noh Agricultural

• Kimura M

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi

• Kimura Makoto

  School Of Agriculture Nagoya University

• Kimura M

  School Of Agriculture Nagoya University

• Murase Jun

  Graduate School Of Bioagricultural Sciences Nagoya University

• Murase J

  Graduate School Of Bioagricultural Sciences Nagoya University

• Ishibashi Eiji

  Agricultural Experiment Station Okayama Prefectural General Agricultural Center

• Murase J

  Nagoya Univ. Nagoya Jpn

• Kimura Makoto

  Graduate School Of Bioagricultural Sciences Nagoya University

• Kimura Makoto

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi

• Kimura Makoto

  Graduate School Of Agricultural Sciences Nagoya University

• Murase Jun

  Graduate School of Bioagricultural Science, Nagoya University

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