Molecular Analysis of β-Proteobacterial Ammonia Oxidizer Populations in Surface Layers of a Submerged Paddy Soil Microcosm (Soil Biology)
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概要
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The structure of the β-proteobacterial auto trophic ammonia-oxidizing bacterial (AOB) communities in a microcosm of submerged paddy soil was determined by denaturing gradient gel electrophoresis (DGGE) analysis of 16S rRNA gene fragments amplified using AOB-selective primers. Shift in the community composition was observed 4 weeks after submergence. The communities from the surface layers (0-1, 2-3 mm) of the soil microcosm were different from those of the subsurface layers (6-9, >15 mm) and DGGE bands specific to each layer were detected. The majority of the retrieved sequences were Mtrosospira-like, whereas no Nitrosomonas-like sequences were obtained. The 16S rDNA primer set also amplified sequences that were not related to the known Nitrosospira-Nitrosomonas group, although they showed a close relationship with other groups of β-proteobacteria. The results suggest that Nitrosospira-like populations are dominant AOB populations in the submerged paddy soil, and that the oxic layer of submerged paddy soil harbours the specific AOB.
- 社団法人日本土壌肥料学会の論文
著者
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KIMURA Makoto
Graduate School of Bioagricultural Sciences, Nagoya University
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MURASE Jun
Graduate School of Bioagricultural Sciences, Nagoya University
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Kano Mayuko
Graduate School Of Bioagricultural Sciences Nagoya University
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Murase Jun
Graduate School Of Bioagricultural Sciences Nagoya University
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Itoh Kumiko
Graduate School of Bioagricultural Sciences, Nagoya University
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Itoh Kumiko
Graduate School Of Bioagricultural Sciences Nagoya University
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Kimura Makoto
Graduate School Of Bioagricultural Sciences Nagoya University
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Kimura Makoto
Graduate School Of Agricultural Sciences Nagoya University
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