Succession and phylogenetic profile of eukaryotic communities in rice straw incorporated into a rice field : Estimation by PCR-DGGE and sequence analyses(Soil Biology)

スポンサーリンク

概要

• 論文の詳細を見る

• Succession and the phylogenetic profile of eukaryotic communities associated with rice straw decomposition in a rice field were studied using polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) analysis followed by 18S rDNA sequencing. Nylon mesh bags containing leaf sheaths or blades were buried in the plow layer of a rice field under flooded conditions after transplanting (Experiment 1) and under drained conditions during the off-crop season (Experiment 2). In addition, rice straw samples in Experiment 2 were taken out before plowing in spring and re-placed in the rice field under flooded conditions at transplanting. Statistical analyses based on DGGE patterns showed that eukaryotic communities were divided into two groups, namely group A before the placement in soil, after the midseason drainage in Experiment 1 and under the drained conditions in Experiment 2 and group B before the mid-season drainage in Experiment 1 and under the flooded conditions in Experiment 2. Based on the sequence analysis of DGGE bands, which characterized the eukaryotic communities, succession of the communities was revealed, that is, most of the bands in group A were closely related to fungi, whereas the bands in group B were closely related to protozoa. These results indicated that eukaryotic communities associated with rice straw decomposition in the rice field are mainly affected by soil conditions, such as oxic or reduced conditions, irrespective of rice straw parts (leaf sheaths and blades).

• 社団法人日本土壌肥料学会の論文

著者

• KIMURA Makoto

  Graduate School of Bioagricultural Sciences, Nagoya University

• 木村 真人

  Laboratory Of Soil Biology And Chemistry School Of Agricultural Sciences Nagoya University

• 木村 眞人

  名大農

• Asakawa Susumu

  Graduate School of Bioagricultural Sciences, Nagoya University

• Asakawa Susumu

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bio-agricultural Sciences Nagoya Univers

• Kimura Makoto

  Nagoya Univ. Aichi Jpn

• Asakawa Susumu

  Nagoya Univ. Nagoya Jpn

• Tun C

  Graduate School Of Bioagricultural Sciences Nagoya University

• Tun Cho

  名大院 生命農

• Asakawa S

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi

• Asakawa Susumu

  Graduate School Of Bioagricultural Sciences Nagoya University

• Asakawa S

  Kyushu National Agricultural Experiment Station

• Katoh Masahiko

  Graduate School Of Bioagricultural Sciences Nagoya University:(present Address)zen-noh Agricultural

• Kimura M

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi

• Kimura Makoto

  School Of Agriculture Nagoya University

• Kimura M

  School Of Agriculture Nagoya University

• TUN Cho

  Graduate School of Bioagricultural Sciences, Nagoya University

• SUGANO Atsuo

  Graduate School of Bioagricultural Sciences, Nagoya University

• TSUCHIMOTO Hidetaka

  Graduate School of Bioagricultural Sciences, Nagoya University

• Tun Cho

  Graduate School Of Bioagricultural Sciences Nagoya University

• Sugano Atsuo

  Graduate School Of Bioagricultural Sciences Nagoya University:life Science Research Institute Kumiai

• Kimura Makoto

  Graduate School Of Bioagricultural Sciences Nagoya University

• Kimura Makoto

  Laboratory Of Soil Biology And Chemistry Graduate School Of Bioagricultural Sciences Nagoya Universi

• Tsuchimoto Hidetaka

  Graduate School Of Bioagricultural Sciences Nagoya University

• Kimura Makoto

  Graduate School Of Agricultural Sciences Nagoya University

関連論文

• The impact of nigorobuna crucian carp larvae/fry stocking and rice-straw application on the community structure of aquatic organisms in Japanese rice fields
• 2 葉面処理が水稲根面微生物の分布に及ぼす影響(関東支部講演会講演要旨)
• Bacterial Communities Associated with Nodal Roots of Rice Plants along with the Growth Stages : Estimation by PCR-DGGE and Sequence Analyses (Soil Biology)
• 16-24 水田における栄養塩類の収支に関する研究(第1報) : 水稲生育に伴う暗渠水中の栄養塩類の経時変化(16.水田土壌肥沃度)
• 6-6 水田土壌の逐次還元過程に関与する微生物群集構造(第一報) : 嫌気呼吸のための各種電子受容体を添加した土壌におけるPLFA, PCR-RFLPパターンの経時的変化(6.土壌生物)
• 水稲根に生息する微生物群集に関する研究 : PCR-DGGE法による真核生物群集の解析(6. 土壌生物, 2004年度大会講演要旨集)
• 6-8 水田土壌中における植物遺体の分解に関与する微生物群集に関する研究(第1報) : RFLPパターンから見た植物遺体サイズ・採取時期の影響(6.土壌生物)
• 6-3 水田田面水中の微生物群集構造に関する研究(第1報) : 長期肥料連用試験圃場におけるRFLPパターンの季節変動(6.土壌生物)
• 6-12 異なる炭酸ガス条件下で栽培した水稲の根面微生物群集の比較(6.土壌生物)
• Methanogenic archaeal communities in paddy field soils in north-east China as evaluated by PCR-DGGE, sequencing and real-time PCR analyses(Soil Biology)
• Low diversity of T4-type bacteriophages in applied rice straw, plant residues and rice roots in Japanese rice soils : Estimation from major capsid gene (g23) composition(Soil Biology)
• 6-17 水田土壌の逐次還元過程に関与する微生物群集(予報)(6.土壌生物)
• 6-40 環境中での利用を目的とした安全な組換え微生物の作出 : 誘導性プロモーターとリプレッサー、致死遺伝子による組換え体の制御(6.土壌生物)
• Change in T4-type bacteriophage communities during the composting process of rice straw : Estimation from the major capsid gene (g23) sequences(Soil Biology)
• T4-type bacteriophage communities estimated from the major capsid genes (g23) in manganese nodules in Japanese paddy fields(Soil Biology)
• Methanogenic archaeal communities developed in paddy fields in the Kojima Bay polder, estimated by denaturing gradient gel electrophoresis, real-time PCR and sequencing analyses(Soil Biology)
• Bacterial communities in iron mottles in the plow pan layer in a Japanese rice field : Estimation using PCR-DGGE and sequencing analyses(Soil Biology)
• Bacterial communities in manganese nodules in rice field subsoils : Estimation using PCR-DGGE and sequencing analyses(Soil Biology)
• 6-7 Bacterial communities inhabiting manganese nodules in rice field subsoils estimated by PCR-DGGE of 16S rDNA
• Effect of Application of Rice Straw and Compost on the Bacterial Communities Associated with Moina sp. in the Floodwater of a Paddy Soil Microcosm : Estimation Based on DGGE Pattern and Sequence Analyses (Soil Biology)
• Bacterial Communities Responsible for the Decomposition of Rice Straw Compost in a Japanese Rice Paddy Field Estimated by DGGE Analysis of Amplified 16S rDNA and 16S rRNA Fragments (Soil Biology)
• Comparison of Bacterial Communities Associated with Microcrustaceans from the Floodwater of a Paddy Field Microcosm : Estimation Based on DGGE Pattern and Sequence Analyses (Soil Biology)
• Vertical Changes in Bacterial Communities in Percolating Water of a Japanese Paddy Field as Revealed by PCR-DGGE (Soil Biology)
• Microbial Communities Responsible for the Decomposition of Rice Straw Compost in a Japanese Rice Paddy Field Determined by Phospholipid Fatty Acid (PLFA) Analysis(Soil Biology)
• Nutrient Leaching from the Plow Layer by Water Percolation and Accumulation in the Subsoil in an Irrigated Paddy Field(Soil Physics)
• Bacterial Community Associated with Five Species of Microcrustaceans in the Floodwater of a Paddy Field Microcosm
• Succession and Phylogenetic Profile of Eukaryote in the Composting Process of Rice Straw Estimated by PCR-DGGE Analysis
• Analysis of communities of ammonia oxidizers, methanotrophs, and methanogens associated with microcrustaceans in the floodwater of a rice field microcosm
• Succession and Phylogenetic Profile of Methanogenic Archaeal Communities during the Composting Process of Rice Straw Estimated by PCR-DGGE Analysis(Soil Biology)
• Analysis of Communities of Ammonia Oxidizers, Methanotrophs, and Methanogens Associated with Microcrustaceans in the Floodwater of a Rice Field Microcosm(Soil Biology)
• Succession and Phylogenetic Composition of Bacterial Communities Responsible for the Composting Process of Rice Straw Estimated by PCR-DGGE Analysis (Soil Biology)
• Comparison of Microbial Communities in Percolating Water from Plow Layer and Subsoil Layer Estimated by Phospholipid Fatty Acid (PLFA) Analysis
• Succession of Microbiota Estimated by Phospholipid Fatty Acid Analysis and Changes in Organic Constituents during the Composting Process of Rice Straw
• Sites and Processes of Nutrient Accumulation in the Subsoil through Water Percolation from the Plow Layer in a Submerged Paddy Soil Microcosm(Soil Physics)
• PA-22 Bacterial communities in paddy fields with long-term application of rice straw compost(Agricultural ecosystem,Poster presentation A)
• PA-19 Molecular ecological analyses of methanogenic archaeal 16S rRNA and mcrA genes in Japanese paddy field soils(Agricultural ecosystem,Poster presentation A)
• Molecular analyses reveal stability of bacterial communities in bulk soil of a Japanese paddy field : Estimation by denaturing gradient gel electrophoresis of 16S rRNA genes amplified from DNA accompanied with RNA(Soil Biology)
• B-20 Molecular Identification of Methane-Oxidizing Bacteria in Rice Paddy Field
• Comparison of Phospholipid Fatty Acid Composition in Percolating Water, Floodwater, and the Plow Layer Soil during the Rice Cultivation Period in a Japanese Paddy Field
• Changes in Molecular Structure of Biodegradable Plastics during Degradation in Soils Estimated by FT-IR and NMR
• Influence of Weather Conditions and Soil Properties on Degradation of Biodegradable Plastics in Soil
• Effect of elevated atmospheric CO_2 concentration on ammonia oxidizing bacteria communities inhabiting in rice roots(Soil Biology)
• Effect of Free-Air CO_2 Enrichment (FACE) on the Community Structure of Aquatic Organisms in Floodwater of a Japanese Paddy Field during the Flooding Period of Rice Cultivation (Soil Biology)
• Effect of Free-Air CO_2 Enrichment (FACE ) on Methanogenic Archaeal Communities Inhabiting Rice Roots in a Japanese Rice Field (Soil Biology)
• Comparison of Aquatic Organisms Communities between Paddy Fields under Rice-Duck (Aigamo) Farming and Paddy Fields under Conventional Farming(Soil Biology)
• Vertical changes in bacterial and archaeal communities with soil depth in Japanese paddy fields(Soil Biology)
• Molecular characterization of methane-oxidizing bacteria associated with rice straw decomposition in a rice field(Soil Biology)
• Succession and phylogenetic profile of eukaryotic communities in rice straw incorporated into a rice field : Estimation by PCR-DGGE and sequence analyses(Soil Biology)
• 6-14 Phylogenetic characterization of methane oxidizing bacteria inhabiting in rice straw incorporated into rice fields
• Succession and Phylogenetic Profile of Eubacterial Communities in Rice Straw Incorporated into a Rice Field : Estimation by PCR-DGGE Analysis (Soil Biology)
• Community Structure of Eukaryotes in Rice Roots Estimated by PCR-DGGE Pattern and Sequence Analyses(Soil Biology)
• タイ国塩性土壌の特性とその改良 : 海外における土壌肥料研究の成果6
• 4-17 水田土壌の生物的窒素固定におよぼす稲わら施用効果 : (第1報)窒素固定に影響をおよぼす環境要因(4.土壌生物)
• 4-16 水稲根圏の特性の解析(第6報) : 水稲根周辺土壌の酸化と還元(4.土壌生物)
• 4-17 農薬散布の土壌生物相に及ぼす影響について(第3報) : 圃場調査その3(4.土壤微生物)
• Morphology, host range and phylogenetic diversity of Sphingomonas phages in the floodwater of a Japanese paddy field(Soil Biology)
• P6-5 Comparison of T4-type bacteriophage communities in paddy soils between Japan and Northeast China as estimated from major capsid gene (g23) sequences
• Ecology of viruses in soils : Past, present and future perspectives
• Abundance of bacteriophages of common heterotrophic bacteria in the floodwater of a Japanese paddy field(Soil Biology)
• Seasonal variations in the abundance of virus-like particles and bacteria in the floodwater of a Japanese paddy field(Soil Biology)
• Succession and phylogenetic composition of eubacterial communities in rice straw during decomposition on the surface of paddy field soil(Soil Biology)
• Effect of Application of Rice Straw and Compost on the Community Structure of Bacteria Associated with Microcrustaceans in the Floodwater of a Paddy Field Microcosm
• Effect of Application of Rice Straw and Compost on the Community Structure of Bacteria Associated with Microcrustaceans in the Floodwater of a Paddy Field Microcosm (Soil Biology)
• Phospholipid Fatty Acid Composition of Microbiota in the Percolating Water from a Rice Paddy Microcosm
• Microbiota Responsible for the Decomposition of Rice Straw in a Submerged Paddy Soil Estimated from Phospholipid Fatty Acid Composition
• Molecular Analysis of β-Proteobacterial Ammonia Oxidizer Populations in Surface Layers of a Submerged Paddy Soil Microcosm (Soil Biology)
• Soil organic matter dynamics in lands continuously cultivated with maize and soybean in Heilongjiang Province, Northeast China : Estimation from natural ^C abundance(Soil Chemistry and Mineralogy)
• Phylogenetic distribution of bacteria isolated from the floodwater of a Japanese paddy field(Soil Chemistry and Mineralogy)
• P6-4 水田土壌中に埋設した稲わらの分解過程に関与する真核生物群集のPCR-DGGE解析(ポスター紹介,6.土壌生物,日本土壌肥料学会 2005年度大会講演要旨集)
• B-23 水田土壊中における稲わらの分解過程に関与するメタン生成古細菌群集の解析(群集構造解析,口頭発表)
• 水田土壌中の稲わらの分解過程に関与する微生物群集のPCR-DGGE解析(中部支部講演会, 日本土壌肥料学会支部講演会講演要旨集2004年度)
• Molecular analysis of the ammonia oxidizing bacterial community in the surface soil layer of a Japanese paddy field(Soil Biology)
• Comparison of Phospholipid Fatty Acid Composition in Floodwater and Plow Layer Soil during the Rice Cultivation Period in a Japanese Paddy Field
• Seasonal Variations of Phospholipid Fatty Acid Composition in the Floodwater of a Japanese Paddy Field under a Long-Term Fertilizer Trial
• Application of the First-Order Reaction (FOR) Model to Nodulation by Bradyrhizobium japonicum in the Nodulation-Dilution Frequency Method and Estimation of Time of Initiation of Nodulation
• Influence of Surface Printing Materials on the Degradability of Biodegradable Plastic Films in Soil (Soil Biology)
• Characterization of ammonia oxidizing bacteria associated with weeds in a Japanese paddy field using amoA gene fragments(Soil Biology)
• 6-15 Diversity of Ammonium Oxidizing Bacteria Associated with Weeds Growing in a Japanese Paddy Field
• Changes in the Community Structure of Aquatic Organisms after Midseason Drainage in the Floodwater of Japanese Paddy Fields (Soil Biology)
• Methanogenic Archaeal Communities in Rice Roots Grown in Flooded Soil Pots : Estimation by PCR-DGGE and Sequence Analyses(Soil Biology)
• Phylogenetic Study on CTO Primer-Amplified Ammonia-Oxidizing Bacteria and β-Proteobacteria Associated with Rice Roots Grown in a Flooded Paddy Soil (Soil Biology)
• Community Structure of Bacteria and Fungi Responsible for Rice Straw Decomposition in a Paddy Field Estimated by PCR-RFLP Analysis
• 6-3 Community structure of microbiota responsible for rice straw decomposition in a paddy field estimated by PCR-RFLP analysis
• Microscopic Observation of the Decomposition Process of Leaf Blade of Rice Straw and Colonizing Microorganisms in a Japanese Paddy Field Soil during the Cultivation Period of Paddy Rice
• Composition and structure of aquatic organism communities in various water conditions of a paddy field
• Molecular analysis of fungal communities of biodegradable plastics in two Japanese soils(Soil Biology)
• High frequency of phage-infected bacterial cells in a rice field soil in Japan(Soil Biology)
• Populations, Community Composition and Biomass of Aquatic Organisms in the Floodwater of Rice Fields and Effects of Field Management
• Carbon flow into ammonia-oxidizing bacteria and archaea during decomposition of ^C-labeled plant residues in soil(Soil biology)
• Bacterial communities that decompose root cap cells in an anaerobic soil : estimation by DNA-SIP method using rice plant callus cells
• 6-14 Bacterial communities incorporating carbon of root cap cells under upland soil conditions (DNA-SIP approach)
• リン脂質脂肪酸組成の分析による水田土壌中の稲わら分解過程における微生物群集構造の解析(2002年度大会一般講演要旨)
• T4-type bacteriophage communities in Japanese paddy fields estimated from major capsid gene (g23) sequences(The annal Meeting of the Society in 2008)
• Succession and phylogenetic profile of methanogenic archaeal communities during the composting process of rice straw estimated by PCR-DGGE analysis(The annual Meeting of the Society in 2004)
• Diversity of Cultivable Methane-Oxidizing Bacteria in Microsites of a Rice Paddy Field : Investigation by Cultivation Method and Fluorescence in situ Hybridization (FISH)
• 塩入土壌学の時代背景と思想 : 没後50年を迎えて(2011年つくば大会シンポジウムの概要)
• Phylogenetic diversity of microturbellarians in Japanese rice paddy fields, with special attention to the genus Stenostomum(Soil Biology)
• Bacterial communities that decompose root cap cells in an anaerobic soil : estimation by DNA-SIP method using rice plant callus cells(Soil biology)
• Bacterial consortia in iron-deposited colonies formed on paddy soil surface under microaerobic conditions(Soil biology)
• Bacterial communities that decompose root cap cells in an anaerobic soil : estimation by DNA-SIP method using rice plant callus cells

もっと見る 閉じる

スポンサーリンク