An approach to peak detection in GC-MS chromatograms and application of KNApSAcK database in prediction of candidate metabolites
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概要
- 論文の詳細を見る
Since 2004, we have been developing a metabolite database concerning species-metabolite relations called KNApSAcK, which currently contains 49,165 species-metabolite relations incorporating 24,847 metabolites. In the present study, we report current status of KNApSAcK database and its application to metabolomics fields and propose a new algorithm for detecting fragmentation patterns in a complicated mixture such as a plant tissue and a new scheme for analyzing spectral information leading to peak annotation of GC-MS spectra. When considering samples corresponding to a variety of species in addition to model species, KNApSAcK DB has strong potential for contribution to metabolomics research by way of applying it not only to simple metabolite search but also to further metabolomics analysis.
- 日本植物細胞分子生物学会の論文
- 2009-03-25
著者
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Bamba Takeshi
Department of Biotechnology, Graduate School of Engineering, Osaka University
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Fukusaki Eiichiro
Department of Biotechnology, Graduate School of Engineering, Osaka University
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Suzuki Hideyuki
Kazusa DNA Research Institute
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TAKAHASHI Hiroki
Graduate School of Information Science, Nara Institute of Science and Technology
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NAKAMURA Kensuke
Graduate School of Information Science, Nara Institute of Science and Technology
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KANAYA Shigehiko
Graduate School of Information Science, Nara Institute of Science and Technology
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ALTAF-UL-AMIN Md.
Graduate School of Information Science, Nara Institute of Science and Technology
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HIRAI Aki
Graduate School of Information Science, Nara Institute of Science and Technology
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Nakamura Kensuke
Graduate School Of Information Sci. Nara Inst. Of Sci. And Technol.
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Hashimoto T
Department Of Biotechnology Graduate School Of Engineering Osaka University
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柴田 大輔
(財)かずさディー・エヌ・エー研究所
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Nakamura Kensuke
Graduate School Of Information Science Nara Institute Of Science And Technology
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OISHI Takashi
Graduate School of Information Science, Nara Institute of Science and Technology
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TANAKA Ken-ichi
Graduate School of Information Science, Nara Institute of Science and Technology
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HASHIMOTO Takuya
Department of Biotechnology, Graduate School of Engineering, Osaka University
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SHINBO Yoko
Graduate School of Information Science, Nara Institute of Science and Technology
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JUMTEE Kanokwan
Department of Biotechnology, Graduate School of Engineering, Osaka University
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SHIBATA Daisuke
Kazusa DNA Research Institute
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ASAHI Hiroko
Graduate School of Information Science, Nara Institute of Science and Technology
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KUROKAWA Ken
Department of Biological Information, Tokyo Institute of Technology
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NAKAMURA Yukiko
Kazusa DNA Research Institute
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Sekizaki Haruo
Plant Science Center Riken
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Hirai Aki
Graduate School Of Information Science Nara Institute Of Science And Technology
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Shinbo Yoko
Graduate School Of Information Science Nara Institute Of Science And Technology
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Asahi Hiroko
Graduate School Of Information Science Nara Institute Of Science And Technology
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Kurokawa Ken
Dep. Of Biological Information Tokyo Inst. Of Technol.
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Kurokawa Ken
Department Of Biological Information Tokyo Institute Of Technology
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Bamba Takeshi
Department Of Biotechnology Graduate School Of Engineering Osaka University
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Bamba Takeshi
Dept. Mat. Life Sci. Osaka Univ
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Bamba Takeshi
Department Of Applied Environmental Biology Graduate School Of Pharmaceutical Sciences Osaka Univers
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Oishi Takashi
Graduate School Of Information Science Nara Institute Of Science And Technology
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Altaf-ul-amin Md.
Graduate School Of Information Science Nara Institute Of Science And Technology
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Altaf‐ul‐amin Md.
Nara Institute Of Science And Technology Graduate School Of Information Science
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Shinshi H
Kazusa Dna Research Institute
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Jumtee Kanokwan
Department Of Biotechnology Graduate School Of Engineering Osaka University
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Shibata Daisuke
Graduate School Of Life Sciences Tohoku University
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Hashimoto Takuya
Department Of Biotechnology Graduate School Of Engineering Osaka University
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Kanaya Shigehiko
Nara Institute Of Science And Technology Graduate School Of Information Science
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Kanaya Shigehiko
Graduate School Of Information Science Nara Institute Of Science And Technology
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Fukusaki Eiichiro
Division Of Advanced Science And Biotechnology Graduate School Of Engineering Osaka University
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Seki Hikaru
Plant Sci. Center Riken
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Tanaka Ken-ichi
Graduate School Of Information Science Nara Institute Of Science And Technology
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Fukusaki Eiichiro
Department Of Biotechnology Faculty Of Engineering Osaka University
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Fukusaki Eiichiro
Dept. Mat. Life Sci. Osaka Univ
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KANAYA Shigehiko
RIKEN Plant Science Center
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Shibata Daisuke
Kazusa Dna Res. Inst. Chiba Jpn
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Shibata Daisuke
Kazusa Dna Res. Inst.
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Hashimoto Takuya
Department Of Applied Physics College Of Humanities And Sciences Nihon University
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Jumtee Kanokwan
Nara Prefectural Small And Medium Sized Enterprises Support Corporation:department Of Biotechnology
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Takahashi Hiroki
Graduate School Of Information Science Nara Institute Of Science And Technology
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Takahashi Hiroki
Graduate School Of Human And Environmental Studies Kyoto University
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Takahashi Hiroki
Graduate School of Biomedical Engineering, Tohoku University, Sendai 980-8579, Japan
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Kurokawa Ken
Department of Bioinformatics and Genomics, Graduate School of Information Science, Nara Institute of Science and Technology
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