A Coupled Bass-Rotator Model for Structure and Dynamics of DNA : Local Fluctuations in Helical Twist Angles and Topological Solitons(<Special feature>Condensed Matter and Statistical Physics)
スポンサーリンク
概要
- 論文の詳細を見る
Structure and dynamics of DNA are studied by using a model dynamical system in which each base in the system, coupled with its complementary base and nearest neighbours in the same strand by the hydrogen-bonding and the stacking energy, respectively, is allowed to rotate in a plane perpendicular to the helical axis. The potential energy of the base system is taken to be composed of two parts, intra-strand base-base interaction energy and inter-stand one, in which base-sequence variation of interaction constants is neglected. When the intra-strand interactions are much larger than the inter-strand ones, a continuum approximation can be used, and the model system in its simplified yet nontrivial case, it is shown that there exist fairly large local fluctuations in helical twist angles from one base pair to the next characterized by commensurate, incommensurate and chaotic phases, in addition to the conventional, idealized B-form.
- 理論物理学刊行会の論文
- 1984-10-25
著者
-
Takeno Shozo
Department Of Information Systems Faculty Of Information Science Osaka Institute Of Technology
-
Homma Shigeo
Department Of Applied Physics Faculty Of Engineering Nagoya University
-
Takeno Shozo
Department Of Physics Kyoto University
-
Takeno Shozo
Department Of General Education Osaka Institute Of Technology
-
Takeno Shozo
Department of Physics, Faculty of Engineering and Design Kyoto Institute of Technology
-
HOMMA Shigeo
Department of Applied Physics, Nagoya University
関連論文
- A-3 日本語医学専門用語の構造解析(用語からの接近)
- 医学専門用語の構造解析
- 日本語医学用語の構造解析
- 設計支援のための自然法則知識の法則-自然法則間の関係に注目した体系化-
- 《第4回》 自然法則の体系化による新技術開発支援
- 自然法則データベースの研究
- 自然法則データベースのためのオブジェクト指向モデリング
- 文書間の関連性を可視化することによる文献検索システム
- 情報検索サービス (第5回学術情報センターシンポジウム報告 2)
- 複数論文比較によるキーワード推定の試み
- メインフレームからオープンシステムへ
- 電子計算機システムの更新
- NACSIS-IRの検索機能の高度化
- Theory of Rotational Excitations in Solid Ortho-Hydrogen
- Low-Lying Rotational Excited States in Solid Ortho-Hydrogen
- Superconductivity by Fermion Pairing in Real Space and the Physical Properties of High-T_c Oxide Superconductors
- Josephson Effect and Critical Current by Fermion Pairing in Real Space and High-T_c Oxide Superconductors
- Oscillatory Dynamical Correlations and Elementary Excitations in Liquid He^4 : Condensed Matter and Statistical Physics
- Intrinsic Localized Vibrational Modes in Anharmonic Crystals : Stationary Modes
- Vibron solitons and Soliton-Induced Infrared Spectra of Crystalline Acetanilide : Condensed Matter and Statistical Physics
- Kinks and Breathers Associated with Collective Sugar Puckering in DNA : Condensed Matter and Statistical Physics
- Frequencies of Localized Lattice Vibrations in One-and Three-Dimensional Lattices (Part I. Time Independent Problem)
- Short-Range Spin Pair Correlation in the One-Dimensional Quantum XXZ Model : Condensed Matter and Statistical Physics
- Off-Diagonal Induction of Short-Range Order : Spin Pair Correlation of the Quantum XXZ-model
- Theoretical Basis of the Decoupled Cell Monte Carlo Simulation for Quantum Systems
- Decoupled Cell Monte Carlo Method for Quantum Spin Systems on Linear Chain and on Triangular Lattice
- Decoupled Cell Method Monte Carlo Simulation for Quantum Spin Systems : Condensed Matter and Statistical Physics
- Monte Carlo Simulation for Quantum Spin Systems
- Recurrence Formulae and Two-Dimensional Toda Lattice
- Solutions of Two-and Three-Dimensional Toda Lattice Equations in Terms of Various Forms of Bessel Functions
- Sine-Lattice Equation.II.Nearly Integrable Soliton Properties of π-Kinks and Sonic π-Kinks
- Statistical Mechanics of the One-Dimensional Plane Rotator Model in an External Field
- A Sine-Lattice (Sine-Form Discrete Sine-Gordon) Equation : One-and Two-Kink Solutions and Physical Models
- Phonon-Like Excitations in Liquid Helium
- Frequency Spectrum and Low-Temperature Specific Heat of Noncrystalline Solids
- A Theory of Frenkel Excitons Using a Two-Level-Atom Model
- Existence of Nonlinear Rotating Modes in Intrinsic Josephson Effects in High-T_c Superconductors : Condensed Matter: Electronic Properties, etc.
- Self-Sustained Kinks in a One-Dimensional Nonlinear Lattice with Dissipation
- Propagation of a Soliton and a Nonlinear Self-Localized State in a One-Dimensional Disordered Nonlinear Lattice
- Entropy of Binding between Vacancy and Solute in Harmonic Lattices
- Numerical Simulation of Kink Dynamics in Sine-Lattice Discrete Double Sine-Gordon Equation : General and Mathematical Physcis
- Numerical Evidence of the Existence of Approximate Kink-Antikink States and Breather-Like Modes in Sine-Form Discrete Double Sine-Gordon Equation
- Theory of Phase Transitions in Molecular Crystals Applied to the Solid Hydrogen Halides
- Nonlinear Excitations and Coherent States in the Ising Model in a Transverse Field
- Self-Localized Anharmonic Rotational Modes of Bases in DNA
- Dynamics and Statistical Mechanics of the Classical Ising Model in a Transverse Field
- Coherent States and Photon Dynamics in the Dicke Model Hamiltonian
- Sine-Lattice Equation.IV.Energy and the Ideal Gas Phenomenology of Kinks
- Approximate (Asymptotically Exact) Solutions for Anharmonic Localized Modes and Vortexlike Modes and Exact Static Vortexlike Mode Solutions in the D-Dimensional Sine-Lattice Equation
- Ground-State Energy and Phonon Spectra of bcc Solid Helium
- A^2 Term, Renormalization of Matter-Photon Interaction and Coherent States in Matter-Photon Systems
- Dynamics and Statistical Mechanics of the Classical Ising Model in a Transverse Field II
- Collective Modes in Quantum Lattice or Three-Dimensional XY Model. II
- Dynamical Properties of the Three-Dimensional XY Model at Low Temperatures
- Scattering of a Soliton by an Impurity Atom in the Toda Lattice and Localized Modes
- A Coupled Bass-Rotator Model for Structure and Dynamics of DNA : Local Fluctuations in Helical Twist Angles and Topological Solitons(Condensed Matter and Statistical Physics)
- Flowing States and Vortices in the Classical XY Model in an External Field
- Vibron Solitons in One-Dimensional Molecular Crystals
- Numerical Illustration of π-Kinks as Fundamental Nonlinear Modes in Sine-Lattice Equation : General and Mathematical Physics
- A Self-Consistent Theory of Memory Function in Classical Simple Liquids. I : Incoherent Scattering Law S_s (k,ω)
- Robust Nature of Dispersionless Envelope Lattice Solitons and Their Propagation in One-Dimensional Disordered Nonlinear Lattices
- Electron Pairing in Real Space,Model Pseudo-Spin Hamiltonian,and Ginzburg-Landau Equation for High-T_c Oxide Superconductors
- Surface Vibration of a Diatomic Simple Cubic Lattice
- Dynamics of Vortices in Bose Fluids and Classical Continuous Spin Models
- Scattering of Spin Waves by Point Imperfections
- Dynamical Structure Factor and Elementary Excitations in Liquid He^3
- Dynamical Structure Factor and Elementary Excitations in Normal Liquid He^3
- High-Frequency Expansion of Memory Function in Classical Simple Liquids
- Local-Field Correction and Dynamical Structure Factor of Electron Liquids
- Nonlinear Excitations in a Matter-Photon System
- Dynamical Structure Factor and Collective Modes in Classical One-Component Plasmas
- Inverse Temperature Expansion for Quantum Lattice Model
- A Green's Function Method for the Frequency Spectrum of an Isotopically Disordered Lattice (Part I. Time Independent Problem)
- Frequencies of Localized Vibrations of a Diatomic Simple Cubic Lattice with a Point Imperfection
- Classical Planar Heisenberg Ferromagnet, Complex Scalar Field and Nonlinear Excitations
- Theory of Solid-Liquid Interface and Crystal Growth
- Collective Modes in the Quantum Lattice or Three-Dimensional XY Model.I
- Sine-Lattice Equation. III. Nearly Integrable Kinks with Arbitrary Kink Amplitude
- A Self-Consistent Theory of Response Function and Effective Potential : A General Theory of Density Fluctuations in Classical and Quantum Liquids
- Nuclear Magnetic Spin-Lattice Relaxation in Solid Ortho-Hydrogen below T_λ
- Infrared Absorption of Solid Hydrogen Associated with Orientational Excitation
- Undamping of Strongly Nonlinear Surface Impurity Localized Mode in the Toda Lattice : Computer Simulation
- Dynamics of Vortices in Two-Dimensional Spin Fluids
- Connection among Equations for the Classical Heisenberg Ferromagnet, the Ernst Equation for the Axisymmetric Gravitational Field and the Yang Equations for the Self-Dual Gauge Field
- Multi-(Resonant-Soliton)-Soliton Solutions and Vortex-Like Solutions to Two- and Three-Dimensional Sine-Gordon Equations
- Mass-Difference Scattering and Lattice Thermal Conductivity
- A Two-Roton Model in Liquid Helium II
- Stationary Solutions to Nonlinear Partial Differential Equations for the Classical Continuous Isotropic Heisenberg Model
- Classical Spin Systems, Nonlinear Evolution Equations and Nonlinear Excitations
- Effect of Orientational Ordering in Solid Hydrogen at Low Ortho Concentration
- Energy Spectrum of Lattices with Defects. I : General Theory
- A High-Frequency Resonant Mode in Lattice Vibrations
- Continuum Approximation for the Motion of a Heavy Particle in One-and Three-Dimensional Lattices (Part II. Time Dependent Problems)
- A Sinh-Lattice Equation-Nearly Integrable Solitons-
- Vibron Solitons and Soliton-Induced Infrared Spectra of Crystalline Acetanilide
- Topological Solitions and Modulated Structure of Bases in DNA Double Helices : A Dynamic Plane Base-Rotator Model
- Vibron Solitons and Coherent Polarization in an Exactly Tractable Oscillator-Lattice System : Applications to Solitons in a Helical Proteins and Frohlich's Idea of Biological Activity : Condensed Matter and Statistical Physics
- Exciton Solitons in One-Dimensional Molecular Crystals
- Frequency Spectrum of a Lattice with Heavy Isotopes
- Resonance Scattering of Lattice Waves by Isotopes