The 5'-end expressed sequence tags of Lotus japonicus
スポンサーリンク
概要
- 論文の詳細を見る
For a global analysis of gene expression during nodule tissue formation in a model legume, Lotus japonicus, a cDNA array was constructed using 18,144 non-redundant clone set deduced from 3′-end expressed sequence tags (EST, Kouchi et al. 2004). In the current study, to obtain peptide coding information from 5′-ends of clone, we generated 7,320 5′ EST sequences. BLAST search against a protein database indicated that 65.5% of the ESTs showed significant similarity to registered sequences. We identified numerous of nodule-enhanced genes, including many involved in diverse cellular processes, suggesting that the EST resources generated in this study will be a useful tool for the identification of genes related to nodulation and symbiotic nitrogen fixation.
- 2008-03-01
著者
-
Tajima Shigeyuki
Department of Bioresource Science, Faculty of Agriculture, Kagawa University
-
TABATA Satoshi
Kazusa DNA Research Institute
-
Nomura Mika
Faculty of Agriculture, Kagawa University
-
Tajima Shigeyuki
Faculty of Agriculture, Kagawa University
-
NOMURA Mika
Department of Life Science, Faculty of Agriculture, Kagawa University
-
ASAMIZU Erika
Kazusa DNA Research Institute
-
Tabata S
Kazusa Dna Res. Inst. Chiba Jpn
-
Tan Dao
Department Of Life Science Faculty Of Agriculture Kagawa University
-
Nomura Mika
Faculty Of Agriculture Kagawa University
-
Nomura Mika
Department Of Hypertension And Cardiorenal Medicine Dokkyo Medical University School Of Medicine
-
Nomura Mika
Deppartment Of Life Sciences Faculty Of Agriculture Kagawa University
-
Nomura M
Kansai Electric Power Co. Inc. Amagasaki Jpn
-
Nomura Mika
Fac. Agr. Kagawa University
-
Nomura Mika
Department Of Life Sciences Faculty Of Agriculture Kagawa University
-
Tabata Satoshi
Kazusa Dna Res.
-
Kouchi H
National Inst. Agrobiological Sci. Ibaraki Jpn
-
Kouchi Hiroshi
National Institute Of Agrobiological Sciences
-
Kouchi Hiroshi
Nati. Inst. Agrobiol. Res.
-
Kouchi Hiroshi
Natio. Insti. Agrobiol. Res. Tsukuba Naist
-
Kouchi Hiroshi
National Institute Of Agrobiological Resources Tsukuba Science City
-
Tajima Shigeyuki
Kagawa Univ. Kagawa Jpn
-
Tajima Shigeysuki
Department Of Life Science Faculty Of Agriculture Kagawa University
-
Arunothayanan Hatthaya
Faculty of Agriculture, Kagawa University
-
Tajima Shigeyuki
Faculty Of Agriculture Kagawa University
-
KOTANI Hirokazu
Kazusa DNA Res. Inst.
-
Tajima S
Faculty Of Agriculture Kagawa University
-
Tajima S
Department Of Life Science Kagawa University
-
Tajima Shigeyuki
Deppartment Of Life Sciences Faculty Of Agriculture Kagawa University
-
Tajima Shigeyuki
Department Of Agricultural Chemistry Faculty Of Agriculture Nagoya University
-
ARUNOTHAYANAN Hatthaya
Department of Life Science, Faculty of Agriculture, Kagawa University
-
Nomura M
Faculty Of Agriculture Kagawa University
-
Tajima Shigeyuki
Fac. Agr. Kagawa University
-
Tajima Shigeyuki
Dept. Of Bioresource Science Faculty Of Agriculture Kagawa University
-
Arunothayanan Hatthaya
Faculty Of Agriculture Kagawa University
-
Tajima Shigeyuki
Department Of Life Sciences Faculty Of Agriculture Kagawa University
-
Nomura Mika
Faculty Of Agriculture Kagawa University Kagawa
-
Tabata S
Kazusa Dna Res. Inst. Chiba
-
Tajima Shigeyuki
Dept. Bioresource Sience Kagawa Univ.
-
Tabata Satoshi
Kazusa Dna Institute
-
Kouchi Hiroshi
Natl. Inst. Agrobiol. Resources.
-
Kouchi Hiroshi
Department Of Plant Sciences National Institute Of Agrobiological Sciences
関連論文
- Purification and Characterization of D-Tagatose 3-Epimerase from Pseudomonas sp. ST-24
- Characterization of soybean genome based on synteny analysis with Lotus japonicus
- The 5'-end expressed sequence tags of Lotus japonicus
- Symbiotic Rhizobium and Nitric Oxide Induce Gene Expression of Non-symbiotic Hemoglobin in Lotus japonicus
- Expression of Symbiotic and Nonsymbiotic Globin Genes Responding to Microsymbionts on Lotus japonicus
- Genome and Chromosome Dimensions of Lotus japonicus
- Analyses of expression and phenotypes of knockout lines for Arabidopsis ABCF subfamily members
- Arabidopsis VIP6/ELF8, the homolog of CTR9 component of the transcriptional complex PAF1, is essential for plant development
- 8-20 Screening of Mesorhizobium loti mutants for symbiotic N_2 fixation in Lotus japonicus
- Gene trap strategy, an effective tool for identification of novel genes expressed in anther tissues in Arabidopsis thaliana
- Expression analysis of gene trap lines and mapping of donor loci for Dissociation transposition in Arabidopsis
- Gene Trapping in Arabidopsis Reveals Genes Involved in Vascular Development
- Identification of a Sed5-like SNARE Gene LjSYP32-1 that Contributes to Nodule Tissue Formation of Lotus japonicus
- AHK5 Histidine Kinase Regulates Root Elongation Through an ETR1-Dependent Abscisic Acid and Ethylene Signaling Pathway in Arabidopsis thaliana
- Characterization of the APRR9 Pseudo-Response Regulator Belonging to the APRR1/TOC1 Quintet in Arabidopsis thaliana
- Toxicity of Free Proline Revealed in an Arabidopsis T-DNA-Tagged Mutant Deficient in Proline Dehydrogenase
- O-15. Construction of red clover (Trifolium pratense L.) chromosome map(Abstracts for the oral and the poster presentations,Abstracts of the Joint Meeting: the 58th Annual Meeting of the Society of Chromosome Research and the 17th Annual Meeting of the Ch
- P-04. Establishment of red clover chromosome map by the improved chromosome image analyzing system, CHIAS4(Abstracts for the oral and the poster presentations,Abstracts of the Joint Meeting: the 58th Annual Meeting of the Society of Chromosome Research an
- O-32. Integration of linkage and chromosome maps of red clover(Trifolium pratense L.)(Abstracts of the oral and poster presentations)
- Functional Analysis of Isoforms of NADPH:Protochlorophyllide Oxidoreductase (POR), PORB and PORC, in Arabidopsis thaliana
- Global Gene Expression in Bradyrhizobium japonicum Cultured with Vanillin, Vanillate, 4-Hydroxybenzoate and Protocatechuate
- NAD^+-malic enzyme affects nitrogenase activity of Mesorhizobium loti bacteroids in Lotus japonicus nodules
- Effect of Volume of Non-Surgical Embryo Transfer Medium on Ability of Porcine Embryos to Survive to Term
- Isolation and Characterization of genes composing NDK gene family in Arabidopsis thaliana
- NAD+-malic enzyme affects nitrogenase activity of Mesorhizobium loti bacteroids in Lotus japonicus nodules
- Differential protein profiles of Bradyrhizobium japonicum USDA110 bacteroid during soybean nodule development(Soil Biology)
- NAD-Malic Enzyme Affects Nitrogen Fixing Activity of Bradyrhizobium japonicum USDA 110 Bacteroids in Soybean Nodules
- 8-11 Proteome analysis of Bradyrhizobium japonicum USDA110 bacteroid differentiation during soybean nodule development
- Genetic Diversity of Native Bradyrhizobium Populations in Soybean-Growing Areas of Northern Thailand (Soil Biology)
- Symbiotic Efficiency and Compatibility of Native Rhizobia in Northern Thailand with Different Soybean Cultivars III. Laboratory Experiment Using Native Isolates from Upland Rainfed Soybean-Growing Areas
- Symbiotic Efficiency and Compatibility of Native Rhizobia in Northern Thailand with Different Soybean Cultivars II. Laboratory Experiment Using Native Isolates from Irrigated Soybean-Growing Areas
- Symbiotic Efficiency and Compatibility of Native Rhizobia in Northern Thailand with Different Soybean Cultivars I. Field Experiment in Irrigated Traditional Soybean-Growing Area
- Promoter analysis of DAHP synthase multigene family in Lotus japonicus
- Construction of a saturated genome map model legume Lotus japonicus using HEGS (high efficiency genome scanning) in half a year
- Identification and Expression Analysis of cDNA Encoding a Chloroplast Recombination Protein REC1, the Chloroplast RecA Homologue in Chlamydomonas reinhardtii(Biochemistry & Molecular Biology)
- Comparative Genetic Studies on the APRR5 and APRR7 Genes Belonging to the APRR1/TOC1 Quintet Implicated in Circadian Rhythm, Control of Flowering Time, and Early Photomorphogenesis
- The Type-A Response Regulator, ARR15, Acts as a Negative Regulator in the Cytokinin-Mediated Signal Transduction in Arabidopsis thaliana
- A Link between Circadian-Controlled bHLH Factors and the APRR1/TOC1 Quintet in Arabidopsis thaliana
- ANALYSIS OF COMPONENTS OF THE PLASTID PROTEIN IMPORT APPARATUS IN ARABIDOPSIS
- Lotus japonicus CLAVATA2 negatively regulates nodulation
- Function and localization of Fab1 in Arabidopsis thaliana
- Functions of Endoxy loglucan Transferase, EXGT-A2 and EXGT-A3 in Arabidopsis thaliana
- Expression Cloning of a Variety of Novel Protein Kinases in Lotus japonicus
- Characterization of Local Rhizobia in Thailand and Distribution of Malic Enzymes
- Nodulation-Dependent Communities of Culturable Bacterial Endophytes from Stems of Field-Grown Soybeans
- SigC, the Group 2 Sigma Factor of RNA Polymerase, Contributes to the Late-stage Gene Expression and Nitrogen Promoter Recognition in the Cyanobacterium Synechocystis sp. Strain PCC 6803
- 8-10 Rhizobial determinants for nodulation and nitrogen fixation with bred soybean
- Cloning and Characterization of a NADP^+ -Malic Enzyme Gene from Bradyrhizobium japonicum USDA110
- A large scale genome analysis of Lotus japonicus
- GENOME SEQUENCE ANALYSIS OF Mesorhizobium loti : A SYMBIONT OF Lotus japanicus
- GENOME SEQUENCE ANALYSIS OF CYANOBACTERIA, Anabaena sp. PCC7120,"Synechococcus elongatus" Toray, Gloeobacter violaceus PCC7421
- GENOME WIDE EXPRESSION MONITORING OF JASMONATE-RESPONSIVE GENES OF ARABIDOPSIS USING cDNA MACROARRAY REVEALED SELF-ACTIVATION OF A SERIES OF JASMONATE BIOSYNTHESIS GENES AND CRPSS TALK WITH OTHER SIGNALING PATHWAYS
- GENOME-WIDE EXPRESSION MONITORING OF JASMONATE-RESPONSIVE GENES OF ARABIDOPSIS USING A cDNA ARRAY
- DNA array technology and gene expression analysis in Arabidopsis thaliana
- The Arabidopsis Genome Project; Current Status of Sequencing and Re-annotation
- GENOME ANALYSIS OF A FILAMENTOUS CYANOBACTERIUM, Anabaena sp. PCC7120
- GENOME ANALYSIS OF A FILAMENTOUS CYANOBACTERIUM, Anabaena sp. PCC7120
- 2P334 Light-induced dissociation of SyPixD (cyanobacterial BLUF type photoreceptor) from SyPixE (response regulator)(42. Sensory signal transduction,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
- Biochemical and Functional Characterization of BLUF-Type Flavin-Binding Proteins of Two Species of Cyanobacteria
- Soybean Cotyledons Contain a Uricase That Cross-Reacts with Antibodies Raised against the Nodule Uricase (Nod-35)
- Purification and Properties of an alpha-L-Arabinofuranosidase from Cotyledons of Soybean Seedlings(Biological Chemistry)
- Cloning, Sequencing and Expression of an α-L-Arabinofuranosidase from Aspergillus sojae
- Purification and Characterization of a β-Glucosidase with β-Xylosidase Activity from Aspergillus sojae
- Purification and Characterization of an Endo-1, 4-β-D-Galactanase from Aspergillus sojae
- Succinate Degradation through the Citric Acid Cycle in Bradyrhizobium japonicum J501 Bacteroids under Low Oxygen Concentrations(Biological Chemistry)
- Proteomic Analysis on Symbiotic Differentiation of Mitochondria in Soybean Nodules
- Characterization of Bacteroid Proteins in Soybean Nodules Formed with Bradyrhizobium japonicum USDA110
- Regulation of uricase activity in developing roots of Glycine max, non-nodulating variety A62-2
- Cadaverine Involved in Urate Degrading Activity (Uricase Activity) in Soybean Radicles
- Application of Repetitive Extragenic Palindromic (REP)-PCR and Enterobacterial Repetitive Intergenic Consensus (ERIC)-PCR Analysis to the Identification and Classification of Japan and Thai Local Isolates of Bradyrhizobium japonicum, Shinorhizobium melilo
- Characteristics of a Urate-Degrading Diamine Oxidase-Peroxidase Enzyme System in Soybean Radicles
- Role of the Putative Membrane-Bound Endo-1,4-β-Glucanase KORRIGAN in Cell Elongation and Cellulose Synthesis in Arabidopsis thaliana
- A MEMBRANE-BOUND ENDO-1,4-β-GLUCANASE IS REQUIRED FOR CELLULOSE BIOSYNTHESIS IN ARABIDOPSIS
- CELL WALL ANALYSIS OF TEMPERATURE SENSITIVE MUTANT acwl OF A. thaliana
- Nucleotide Pools in Soybean Nodule Tissues, a Survey of NAD(P)/NAD(P)H Ratios and Energy Charge
- Symbiotic Nitrogen Fixation at the Late Stage of Nodule Formation in Lotus japonicus and Other Legume Plants
- Impact of plant genotype and nitrogen level on rice growth response to inoculation with Azospirillum sp. strain B510 under paddy field conditions(Fertilizer and Soil Amendments)
- Generation of 919 expressed sequence tags from immature flower buds and gene expression analysis using expressed sequence tags in the model plant Lotus japonicus
- Phosphatidylglycerol is Essential for the Development of Thylakoid Membranes in Arabidopsis thaliana
- DNA content of the cell nucleus in the macroalga Porphyra yezoensis (Rhodophyta)
- Ordered Cosmid Library of the Mesorhizobium loti MAFF303099 Genome for Systematic Gene Disruption and Complementation Analysis
- P10-5 Characterization of a Lotus japonicus mutant showing strong reduction in Molybdenum accumulation
- ANALYSIS OF AUTOPHAGY IN HIGHER PLANTS
- ANALYSIS OF AUTOPHAGY IN HIGHER PLANTS
- Gene Expression Profiling of Coccolith-Bearing Cells and Naked Cells in Haptophyte Pleurochrysis haptonemofera with a cDNA Macroarray System
- 2-OXOGLUTARATE-DEPENDENT DIOXYGENASES INVOLVED IN FLAVONOL SYNTHESIS IN LOTUS JAPONICUS
- Activation tagging approach in a model legume, Lotus japonicus
- DEVELOPMENT OF HIGH DENSITY GENE FILTER OF Synechocystis sp. PCC6803 GENOME
- GENOME SEQUENCING PROJECT OF A CYANOBACTERIUM Synechocystis sp. strain PCC6803
- Identifying and Characterizing Plastidic 2-Oxoglutarate/Malate and Dicarboxylate Transporters in Arabidopsis thaliana
- Comprehensive gene expression analysis of ARABIDOPSIS 5th chromosome long arm region by genome DNA array
- Subsite Affinities of β-Glucosidase from Aspergillus sojae on Various Xylooligosaccharides
- Enzymes of purine catabolism in soybean plants
- The Modes of Action of Two Endo-1, 4-β-_D-Xylanases from Aspergillus sojae on Various Xylooligosaccharides
- Purification and Characterization of Two Xylanases and an Arabinofuranosidase from Aspergillus sojae
- FLUCTUATION OF ENZYME ACTIVITIES RELATED TO NITROGEN FIXATION, C6/Cl RATIO, AND NICOTINAMIDE NUCLEOTIDE CONTENTS DURING SOYBEAN PLANT DEVELOPMENT
- Purification and Characterization of the NADP-Malic Enzyme from Bradyrhizobium japonicum A1017
- PRESENCE AND CHARACTERISTICS OF NADP-MALIC ENZYME IN SOYBEAN NODULE BACTEROIDS
- Protein Profile of Symbiotic Bacteria Mesorhizobium loti MAFF303099 in Mid-growth Phase(Biochemistry & Molecular Biology)
- Expression and characterization of PKL01, an Ndr kinase homolog in Lotus japonicus