Sequence variation and structural conservation in the D-loop region and flanking genes of mitochondrial DNA from Japanese pond frogs

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概要

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• The nucleotide sequences of the D-loop region and its flanking genes of the mitochondrial DNA (mtDNA) from Japanese pond frogs were determined by the methods of PCR, cloning, and sequencing. The frogs belonged to two species, one subspecies, and one local race. The gene arrangements adjacent to the D-loop region were analyzed. The frogs shared a unique mitochondrial gene order that was found in Rana catesbeiana; i.e., cyt b - D-loop region -tRNALeu(CUN) - tRNAThr - tRNAPro -tRNAPhe - 12S rRNA. The arrangements of the three tRNA genes of these frogs were different from those of X. laevis, a species which has the same overall structure as in mammals. Highly repetitive sequences with repeat units (16-bp or 17-bp sequence specific for each taxon) were found in the D-loop region. The length of repetitive sequences varied from 0.6 kbp to 1.2 kbp, and caused the extensive size variation in mtDNA. Several short sequence elements such as putative TAS, Oh, CSB-1, and CSB-2 were found in the D-loop region of these frogs. The sequences of these short regulatory elements were conserved in R. catesbeiana, X. laevis, and also in human. The comparison of sequence divergences of the D-loop region and its adjacent genes among various taxa revealed that the rates of nucleotide substitutions depend on genes. The nucleotide sequences of the 3-side segment of the D-loop region were the most variable among taxa, whereas those of the tRNA and 12S rRNA genes were the most conservative.

• 日本遺伝学会の論文

著者

• YONEKAWA Hiromichi

  Department of Laboratory Animal Science, The Tokyo Metropolitan Institute of Medical Science

• Nishioka M

  Institute For Amphibian Biology Graduate School Of Science Hiroshima University

• Nishioka Midori

  Laboratory For Amphibian Biology Faculty Of Science Hiroshima University

• Nishioka Midori

  Institute For Amphibian Biology Graduate School Of Science Hiroshima University

• Nishioka Midori

  Graduate School Of Science Hiroshima University

• SUMIDA Masayuki

  Laboratory for Amphibian Biology, Faculty of Science, Hiroshima University

• Nishioka Midori

  Laboratory For Amphibian Biology Graduate School Of Science Hiroshima University

• Sumida Masayuki

  Laboratory For Amphibian Biology Faculty Of Science Hiroshima University

• Sumida Masayuki

  Laboratory For Amphibian Biology Graduate School Of Science Hiroshima University

• KANAMORI Yasushi

  Laboratory for Amphibian Biologym, Graduate School of Science, Hiroshima University

• KANEDA Hideki

  Department of Laboratory for Animal Science, Tokyo Metropolitan Institute of Medical Science

• KATO Yoji

  Laboratory for Amphibian Biology, Graduate School of Science, Hiroshima University

• Kaneda H

  Tokyo Metropolitan Inst. Medical Sci. Tokyo Jpn

• Kaneda Hideki

  Department Of Laboratory For Animal Science Tokyo Metropolitan Institute Of Medical Science

• Yonekawa Hiromichi

  Department Of Laboratory For Animal Science Tokyo Metropolitan Institute Of Medical Science

• Yonekawa Hiromichi

  Tokyo Metropolitan Inst. Of Medical Sci.

• Yonekawa Hiromichi

  Dep. Of Lab. Animal Sci. The Tokyo Metropolitan Inst. Of Medical Sci.

• Yonekawa Hiromichi

  Department Of Laboratory Animal Science The Tokyo Metropolitan Institute Of Medical Science (rinshok

• Sumida M

  Institute For Amphibian Biology Graduate School Of Science Hiroshima University

• Kanamori Y

  Hiroshima Univ. Higashihiroshima Jpn

• Kanamori Yasushi

  Laboratory For Amphibian Biologym Graduate School Of Science Hiroshima University

• Yonekawa H

  Department Of Laboratory Animal Science The Tokyo Metroporitan Institute Of Medical Science

• Yonekawa H

  Tokyo Metropolitan Inst. Of Medical Sci.

• Yonekawa Hiromichi

  Department Of Animal Science The Tokyo Metropolitan Institute Of Medical Science

• SUMIDA Masayuki

  Institute for Amphibian Biology, Graduate School of Science, Hiroshima University

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