A Great Leap forward in Microbial Ecology

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概要

• 論文の詳細を見る

• Ribosomal RNA (rRNA) sequence-based molecular techniques emerged in the late 1980s, which completely changed our general view of microbial life. Coincidentally, the Japanese Society of Microbial Ecology (JSME) was founded, and its official journal "Microbes and Environments (M&E)" was launched, in 1985. Thus, the past 25 years have been an exciting and fruitful period for M&E readers and microbiologists as demonstrated by the numerous excellent papers published in M&E. In this mini-review, recent progress made in microbial ecology and related fields is summarized, with a special emphasis on 8 landmark areas; the cultivation of uncultured microbes, in situ methods for the assessment of microorganisms and their activities, biofilms, plant microbiology, chemolithotrophic bacteria in early volcanic environments, symbionts of animals and their ecology, wastewater treatment microbiology, and the biodegradation of hazardous organic compounds.

• 日本微生物生態学会・日本土壌微生物学会の論文

著者

• Yawata Yutaka

  Graduate School of Life and Environmental Sciences, University of Tsukuba

• OHKUMA MORIYA

  RIKEN

• Nomura Nobuhiko

  Graduate School Of Life And Environmental Science University Of Tsukuba

• Yamaguchi Nobuyasu

  Graduate School Of Pharmaceutical Sciences Osaka University

• Kamagata Yoichi

  National Institute For Bioscience And Human-technology Aist Miti

• Kamagata Yoichi

  Bioproduction Research Institute National Institute Of Advanced Industrial Science And Technology (a

• Kamagata Yoichi

  National Institute Of Advanced Industrial Science And Technology (aist)

• Tashiro Yosuke

  Faculty Of Engineering Hokkaido University

• Minamisawa Kiwamu

  Graduate School Of Life Sciences Tohoku Univ.

• Okabe Satoshi

  Faculty Of Engineering Hokkaido University

• Toyofuku Masanori

  Graduate School Of Life And Environmental Sciences University Of Tsukuba

• Oshiki Mamoru

  Faculty Of Engineering Hokkaido University

• Hiraishi Akira

  Department Of Biology Faculty Of Science Tokyo Metropolitan University

• Ohta Hiroyuki

  College Of Agr. Ibaraki Univ.

関連論文

• Similarity of Bacterial Community Structure between Asian Dust and Its Sources Determined by rRNA Gene-Targeted Approaches
• Bacterial growth monitoring in a microfluidic device by confocal reflection microscopy(METHODS)
• Rapid Detection of Starved Escherichia coli with Respiratory Activity in Potable Water by Signal-Amplified in situ Hybridization Following Formazan Reduction
• Azospirillum sp. Strain B510 Enhances Rice Growth and Yield
• Monitoring biofilm development in a microfluidic device using modified confocal reflection microscopy(METHODS)
• Gut of Higher Termites as a Niche for Alkaliphiles as Shown by Culture-Based and Culture-Independent Studies
• 7 INFECTION AND COLONIZATION OF ASEPTICALLY MICROPROPAGATED SUGARCANE SEEDLINGS BY NITROGEN-FIXING ENDOPHYTIC BACTERIUM, HERBASPIRILLUM SP. B501 GFP 1.
• Incorporation of a DNA Sequence Encoding Green Fluorescent Protein (GFP) into Endophytic Diazotroph from Sugarcane and Sweet Potato and the Colonizing Ability of these Bacteria in Brassica oleracea
• An Alkaliphilic and Xylanolytic Paenibacillus Species Isolated from the Gut of a Soil-Feeding Termite
• The cbbL Gene is Required for Thiosulfate-Dependent Autotrophic Growth of Bradyrhizobium japonicum
• Seasonal Change in Methanotrophic Diversity and Populations in a Rice Field Soil Assessed by DNA-Stable Isotope Probing and Quantitative Real-Time PCR
• In Situ Detection and Quantification of Uncultured Members of the Phylum Nitrospirae Abundant in Methanogenic Wastewater Treatment Systems
• Global Gene Expression in Bradyrhizobium japonicum Cultured with Vanillin, Vanillate, 4-Hydroxybenzoate and Protocatechuate
• Biofilm Formation by Lactic Acid Bacteria and Resistance to Environmental Stress(BREWING AND FOOD TECHNOLOGY)
• PB-83 Acid Resistance of Biofilm and Planktonic Lactobacillus plantarum(Surface/Biofilm,Poster presentation B)
• Pseudomonas Quinolone Signal Affects Membrane Vesicle Production in not only Gram-Negative but also Gram-Positive Bacteria
• The Effect of a Cell-to-Cell Communication Molecule, Pseudomonas Quinolone Signal (PQS), Produced by P. aeruginosa on Other Bacterial Species
• NAD-Malic Enzyme Affects Nitrogen Fixing Activity of Bradyrhizobium japonicum USDA 110 Bacteroids in Soybean Nodules
• 8-11 Proteome analysis of Bradyrhizobium japonicum USDA110 bacteroid differentiation during soybean nodule development
• Genetic Diversity of Native Bradyrhizobium Populations in Soybean-Growing Areas of Northern Thailand (Soil Biology)
• Identification and Functional Analysis of Genes Required for Desulfurization of Alkyl Dibenzothiophenes of Mycobacterium sp. G3(GENETICS, MOLECULAR BIOLOGY, AND GENE ENGINEERING)
• Application of Real-Time Long and Short Polymerase Chain Reaction for Sensitive Monitoring of the Fate of Extracellular Plasmid DNA Introduced into River Waters
• Characterization of the Aerobic Denitrification in Mesorhizobium sp. Strain NH-14 in Comparison with that in Related Rhizobia
• Screening of Novel Cellulose-Degrading Bacterium and Its Application to Denitrification of Groundwater(Environmental Biotechnology)
• Nodulation-Dependent Communities of Culturable Bacterial Endophytes from Stems of Field-Grown Soybeans
• 8-10 Rhizobial determinants for nodulation and nitrogen fixation with bred soybean
• Structural Characterization and Surface-Active Properties of a Succinoyl Trehalose Lipid Produced by Rhodococcus sp. SD-74
• Presence of 2,4-D-catabolizing Bacteria in a Japanese Arable Soil that Belong to BANA (Bradyrhizobium-Agromonas-Nitrobacter-Afipia) Cluster in α-Proteobacteria
• Impact of plant genotype and nitrogen level on rice growth response to inoculation with Azospirillum sp. strain B510 under paddy field conditions(Fertilizer and Soil Amendments)
• In Situ Analysis of Community Structure in Activated Sludge with 2-Hydroxy-3-Naphthoic Acid-2'-Phenylanilide Phosphate and Fast Red TR In Situ Hybridization
• 1-10 Community structures of endophytes in soybeans with different nodulation genotypes(Agricultural ecosystem,Oral presentaion)
• Nitrous Oxide Emission and Microbial Community in the Rhizosphere of Nodulated Soybeans during the Late Growth Period
• Nitrous Oxide Emission and Microbial Community in the Rhizosphere of Nodulated Soybeans During the Late Growth Period
• PB-44 Analysis of metabolic features of naturally-occurring aromatic compounds in Bradyrhizobium japonicum based on array and gene disruption(Metabolism/Chemical activity,Poster presentation B)
• Horizontal Transfer of Nodulation Genes in Soils and Microcosms from Bradyrhizobium japonicum to B. elkanii
• Comparative Analysis of Bacterial and Archaeal Communities in Methanogenic Sludge Granules from Upflow Anaerobic Sludge Blanket Reactors Treating Various Food-Processing, High-Strength Organic Wastewaters
• A Combination of Direct Viable Counting, Fluorescence in situ Hybridization, and Green Fluorescent Protein Gene Expression for Estimating Plasmid Transfer at the Single Cell Level
• Involvement of Formate as an Intespecies Electron Carrier in a Syntrophic Acetate-Oxidizing Anaerobic Microorganism in Coculture with Methanogens
• PA-68 Physical enrichment of yet-to-be cultured microorganisms using peptide ligands. : Separation of anaerobes belonging to uncultured lineages of life(Other categories,Poster presentation A)
• 2-16 Isolation of a thermophilic Rice Cluster I methanogen(Taxonomy/Phylogeny,Oral presentation)
• Fluorescence-Quenching Phenomenon by Photoinduced Electron Transfer between a Fluorescence Dye and a Nucleotide Base
• The Ecological Role of a Proteolytic Psychrophile, Flavobacterium limicola Belonging to the Cytophaga-Flavobacteria Cluster, in the Decomposition of Particulate Organic Nitrogen in Freshwater Sediment
• Oligonucleotide Probes for Phylogenetic Detection of Waterborne Bacteria
• Stimulatory Effect of Glutamine and Pyruvate on Plasmid Transfer between Pseudomonas Strains
• Soil Microbial Community Structure in an Asian Dust Source Region (Loess Plateau)
• 1-23 Profiling of bacterial community structure on Asian dust particles by T-RFLP(Community structure 2,Oral presentation)
• Phylogenetic Analysis of Trichloroethylene-Degrading Bacteria Newly Isolated from Soil Polluted with This Contaminant
• PB-61 Methanogen diversity and methanogenic potential in natural gas fields(Community structure,Poster presentation B)
• Bacterial Population Dynamics in a Reverse-Osmosis Water Purification System Determined by Fluorescent Staining and PCR-Denaturing Gradient Gel Electrophoresis
• PA-17 Diversity of Legionella pneumophila in aquatic environment in Japan and Southeast Asian region(Aquatic ecosystem,Poster presentation A)
• Assimilative and co-metabolic degradation of chloral hydrate by bacteria and their bioremediation potential
• The Impact of Aridification and Vegetation Type on Changes in the Community Structure of Methane-Cycling Microorganisms in Japanese Wetland Soils
• Inactivation of Bacteria in Freshwater by Momentary Decompression Following High Pressurization
• 1-19 High-Frequency Phage-Mediated Gene Transfer among Enterobacteriaceae. Determined at the Single-Cell Level(Gene transfer,Oral presentation)
• Rapid Identification and Enumeration of Antibiotic Resistant Bacteria in Urban Canals by Microcolony-Fluorescence in Situ Hybridization
• Bacterial Community Composition and Activity in Urban Rivers in Thailand and Malaysia
• A Great Leap forward in Microbial Ecology
• A novel laccase with urate oxidation activity from Lysobacter sp. T-15
• Isolation and Identification of Bacterial Strains Producing Diffusible Growth Factor(s) for Catellibacterium nectariphilum strain AST4^T
• C-239 Isolation and characterization of a novel microorganism from phosphorus removal sludge, which is related to green nonsulfur bacteria
• Culture-Dependent and Independent Analyses of the Microbial Communities Inhabiting the Giant Duckeweed (Spirodela polyrrhiza) Rhizoplane and Isolation of a Variety of Rarely Cultivated Organisms within the Phylum Verrucomicrobia
• Culture-Dependent and Independent Analyses of the Microbial Communities Inhabiting the Giant Duckweed (Spirodela polyrrhiza) Rhizoplane and Isolation of a Variety of Rarely Cultivated Organisms within the Phylum Verrucomicrobia
• Diversity and Similarity of Microbial Communities in Petroleum Crude Oils Produced in Asia
• Development of a Genotyping Method for Potato Scab Pathogens Based on Multiplex PCR
• Phylogenetic Analysis of Methanogens in Sheep Rumen Ecosystem and Detection of Methanomicrobium mobile by Fluorescence In Situ Hybridization
• Characterization of Phospholipids in Membrane Vesicles Derived from Pseudomonas aeruginosa
• Polymerase Chain Reaction Amplification and Restriction Fragment Length Polymorphism Analysis of 16S rRNA Genes from Methanogens
• Isolation and Characterization of Phototrophic Bacteria Growing in Lighted Upflow Anaerobic Sludge Blanket Reactor
• Staphylococcus epidermidis Forms Floating Micro-colonies in Platelet Concentrates at the Early Stage of Contamination
• 16S rRNA Sequence-based Rapid and Sensitive Detection of Aquatic Bacteria by On-chip Hybridization Following Multiplex PCR
• Detection of Food Poisoning Bacteria in Fresh Vegetables Using DNA Microarray
• Development of Phylogenetic Oligonucleotide Probes for Screening Foodborne Bacteria
• Change in the Bacterial Community of Natural River Biofilm during Biodegradation of Aniline-Derived Compounds Determined by Denaturing Gradient Gel Electrophoresis
• A Great Leap forward in Microbial Ecology
• Soil Microbial Community Structure in an Asian Dust Source Region (Loess Plateau)
• Rapid On-chip flow Cytometric Detection of Listeria monocytogenes in Milk
• High Prevalence of qnr and aac(6’)-Ib-cr Genes in Both Water-Borne Environmental Bacteria and Clinical Isolates of Citrobacter freundii in China
• The Impact of Aridification and Vegetation Type on Changes in the Community Structure of Methane-Cycling Microorganisms in Japanese Wetland Soils
• Microbial Community Analysis in the Roots of Aquatic Plants and Isolation of Novel Microbes Including an Organism of the Candidate Phylum OP10
• A Six-well Plate Method : Less Laborious and Effective Method for Cultivation of Obligate Anaerobic Microorganisms
• Microbial Community Analysis in the Roots of Aquatic Plants and Isolation of Novel Microbes Including an Organism of the Candidate Phylum OP10
• High Prevalence of qnr and aac(6')-Ib-cr Genes in Both Water-Borne Environmental Bacteria and Clinical Isolates of Citrobacter freundii in China
• Primary simple assays of cellulose-degrading fungi
• Case study of the relationship between fungi and bacteria associated with high-molecular-weight polycyclic aromatic hydrocarbon degradation(ENVIRONMENTAL BIOTECHNOLOGY)
• Environmental disease : environmental alteration and infectious disease
• Break Down of Asian Dust Particle on Wet Surface and Their Possibilities of Cause of Respiratory Health Effects
• Rapid Enumeration of Active Legionella pneumophila in Freshwater Environments by the Microcolony Method Combined with Direct Fluorescent Antibody Staining
• A Six-well Plate Method: Less Laborious and Effective Method for Cultivation of Obligate Anaerobic Microorganisms
• Pseudomonas Quinolone Signal Affects Membrane Vesicle Production in not only Gram-Negative but also Gram-Positive Bacteria
• Bacterial Monitoring with Adhesive Sheet in the International Space Station-"Kibo", the Japanese Experiment Module
• 16S Ribosomal RNA Gene-Based Phylogenetic Analysis of Abundant Bacteria in River, Canal and Potable Water in Bangkok, Thailand
• The Impact of Anaerobiosis on Strain-Dependent Phenotypic Variations in Pseudomonas aeruginosa
• Cultivating Yet-to-be Cultivated Microbes: The Challenge Continues
• Interspecies Interaction between Pseudomonas aeruginosa and Other Microorganisms
• Interspecies Interaction between Pseudomonas aeruginosa and Other Microorganisms
• The Combination of Functional Metagenomics and an Oil-Fed Enrichment Strategy Revealed the Phylogenetic Diversity of Lipolytic Bacteria Overlooked by the Cultivation-Based Method
• Physiological and Transcriptomic Analyses of the Thermophilic, Aceticlastic Methanogen Methanosaeta thermophila Responding to Ammonia Stress
• Bacterial Monitoring with Adhesive Sheet in the International Space Station-"Kibo", the Japanese Experiment Module
• The effects of N-acylhomoserine lactones, β-lactam antibiotics and adenosine on biofilm formation in the multi-β-lactam antibiotic-resistant bacterium Acidovorax sp. strain MR-S7(MICROBIAL PHYSIOLOGY AND BIOTECHNOLOGY)
• The Impact of Anaerobiosis on Strain-Dependent Phenotypic Variations in Pseudomonas aeruginosa

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