Two arginine residues in the substrate pocket predominantly control the substrate selectivity of thiocyanate hydrolase(ENZYMOLOGY, PROTEIN ENGINEERING, AND ENZYME TECHNOLOGY)
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概要
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Thiocyanate hydrolase (SCNase) of Thiobacillus thioparus THI115 is a cobalt (Co)-containing enzyme that catalyzes the hydrolysis of thiocyanate (SCN^-), a major component of wastewater from coke oven factories, to carbonyl sulfide and ammonia. Although SCNase exhibits high structural similarities to Co-type nitrile hydratase (NHase), including a unique Co^<3+> catalytic center with two oxidized Cys ligands, both SCNase and NHase exclusively catalyze only their own substrates. Based on the differences in the substrate-binding pockets of these enzymes, βArg90 and γArg136 of SCNase, with side chains extending toward the pocket, were separately substituted with Phe and Trp, the corresponding residues, respectively, in Co-type NHase. Both SCNase βArg90 and SCNase γArg136 mutants showed no SCN^- hydrolysis activity but did catalyze the hydration of nitriles. The estimated kcat values (〜2 s^<-1>) corresponded to approximately 0.2% of that of Co-type NHase for nitrile hydration and approximately 3% of that of wild-type SCNase for SCN^- hydrolysis. The crystal structure of SCNase γR136W is essentially identical to that of the wild-type, including the Co^<3+> center having Cys oxidations; the size of the substrate pocket was enlarged because of conformational changes on the side chains of the mutated residue. Discussion of the difference in the environments around the substrate-binding pockets among the wild-type and mutant SCNases and Co-type NHase strongly suggests that βArg90 and γArg136, positioned at the top of the Co^<3+> center, predominantly control the substrate selectivity of SCNase.
- 2013-07-00
著者
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Katayama Yoko
Department Of Physiology Tokyo Women's Medical University
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Yohda Masafumi
Department Of Biotechnology And Life Science Graduate School Of Engineering Tokyo University Of Agri
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Sato Masa
Department of Natural Environmental Sciences, Faculty of Integrated Human Studies, Kyoto University
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Odaka Masafumi
Department Of Molecular Physiology The Tokyo Metropolitan Institute Of Medical Science
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Watanabe Toshinori
Department Of Aeronautics And Astronautics The University Of Tokyo
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OHTAKI Akashi
Department of Biotechnology & Life Science, Tokyo University of Agriculture & Technology
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Noguchi Keiichi
Instrumentation Analysis Center Tokyo University Of Agriculture & Technology
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Yohda Masafumi
Department of Biotechnology and Life Science, Graduate School of Technology, Tokyo University of Agriculture and Technology
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Yamanaka Yasuaki
Department of Biotechnology and Life Science, Graduate School of Technology, Tokyo University of Agriculture and Technology
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Arakawa Takatoshi
Department of Biotechnology and Life Science, Graduate School of Technology, Tokyo University of Agriculture and Technology
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Namima Satoshi
Department of Biotechnology and Life Science, Graduate School of Technology, Tokyo University of Agriculture and Technology
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Hori Shota
Department of Biotechnology and Life Science, Graduate School of Technology, Tokyo University of Agriculture and Technology
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Katayama Yoko
Department of Environmental and Natural Resource Science, Graduate School of Agriculture, Tokyo University of Agriculture and Technology
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Sato Masa
Department of Biotechnology and Life Science, Graduate School of Technology, Tokyo University of Agriculture and Technology
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Ohtaki Akashi
Department of Biotechnology and Life Science, Graduate School of Technology, Tokyo University of Agriculture and Technology
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Odaka Masafumi
Department of Biotechnology and Life Science, Graduate School of Technology, Tokyo University of Agriculture and Technology
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Watanabe Toshinori
Department of Biotechnology and Life Science, Graduate School of Technology, Tokyo University of Agriculture and Technology
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