Model dependence of the phylogenetic inference : Relationship among Carnivores, Perissodactyls and Cetartiodactyls as inferred from mitochondrial genome sequences
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概要
- 論文の詳細を見る
Some previous analyses of mitochondrial proteins strongly support the Carnivora/Perissodactyla grouping excluding Cetartiodactyla (Artiodactyla + Cetacea) as an outgroup, but the support of the hypothesis remains equivocal from the analysis of several nuclear-encoded proteins. In order to evaluate the strength of the support by mitochondrial proteins, phylogenetic relationship among Carnivora, Perissodactyla, and Cetartiodactyla was estimated with the ML method by using the updated data set of the 12 mitochondrial proteins with several alternative models. The analyses demonstrate that the phylogenetic inference depends on the model used in the ML analysis; i.e., whether the site-heterogeneity is taken into account and whether the rate parameters are estimated for each individual proteins or for the concatenated sequences. Although the analysis of concatenated sequences strongly supports the Carnivora/Perissodactyla grouping, the total evaluation of the separate analyses of individual proteins, which approximates the data better than the concatenated analysis, gives only ambiguous results, and therefore it is concluded that more data are needed to resolve this trichotomy.
- 日本遺伝学会の論文
著者
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Kim Kyung
Department Of Genetic Engineering Kyungpook National University
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Ha J
Kyungpook National Univ. Taegu Kor
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CAO Ying
The Institute of Statistical Mathematics
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HASEGAWA Masami
Department of Oral Microbiology, School of Dentistry
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Hasegawa Masami
Department Of Biology Faculty Of Science Toho University
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HA Ji
The Institute of Statistical Mathematics
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Kim Kyung
Department Of Anesthesia And Pain Medicine School Of Medicine Pusan National University
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Hasegawa Masami
Department Of Genetic Engineering Kyungpook National University
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