Geographic Variation and Diversity of the Cytochrome b Gene in Japanese Wild Populations of Medaka, Oryzias latipes(Animal Diversity and Evolution)

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概要

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• We conducted a polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis of the mitochondrial cytochrome b gene to elucidate the detailed genetic population structure of Japanese wild populations of medaka, Oryzias latipes. The analysis of 1,225 specimens collected from 303 sites identified 67 mitotypes. Subsequently we determined the nucleotide sequences of the complete cytochrome b gene (1141-bp) to clarify the phylogenetic relationships among mitotypes. The phylogenetic tree based on nucleotide sequences indicated three major clades (A, B and C) that differed by 11.3-11.8%, corresponding to three clusters previously identified by RFLP analysis of entire mitochondrial DNAs.The geographic distribution of mitotypes in clades A and B was fully concordant with the Northern and Southern Populations defined by allozymes. Clade A could be subdivided into three subclades and clade B into eleven, with sequence divergences among subclades of 1.3-5.8%. Each distribution of mitotypes in subclades roughly corresponded to that of mtDNA haplotypes in subclusters previously identified. Mitotypes in clade C were found only in the Kanto district. The phylogenetic relationships and the estimated divergence times suggest that three Japanese clades originated from a common ancestor and were separated during the Pliocene, and that the regional differentiation of subclades was closely connected with the geological history of the Quaternary. This study has also demonstrated the possibility of artificial disturbance of natural distribution especially in the Kanto district and the superior efficacy of PCR-RFLP analysis as a simple method for detecting genetic variation and artificial gene flow of medaka.

• 社団法人日本動物学会の論文
• 2003-10-25

著者

• 土屋 公幸

  株式会社応用生物

• 土屋 公幸

  株式会社応用動物

• 土屋 公幸

  国立遺伝学研究所

• 土屋 公幸

  宮崎医科大学付属実験動物施設

• Matsuda Masaru

  Laboratory of Reproductive Biology, National Institute for Basic Biology

• Takehana Yusuke

  Graduate School of Science and Technology, Niigata University

• Sakaizumi Mitsuru

  Graduate School of Science and Technology, Niigata University

• TSUCHIYA Kimiyuki

  Department Zootechnical Science, Tokyo University of Agriculture

• Tsuchiya Kimiyuki

  Applied Biology Co. Ltd. Tokyo Jpn

• Tsuchiya Kimiyuki

  Laboratory Of Wild Animals Department Of Animal Sciences Tokyo University Of Agriculture

• Tsuchiya Kimisachi

  Department Of Agriculture Tokyo University Of Agriculture

• Tsuchiya K

  Department Of Zootechnical Sciences Faculty Of Agriculture Tokyo University Of Agriculture

• Tsuchiya K

  Experimental Animal Center Miyazaki Medical College

• Tsuchiya K

  Tokyo Univ. Agriculture Kanagawa Jpn

• Tsuchiya Kimiyuki

  Department Zootechnical Science Tokyo University Of Agriculture

• Matsuda Masaru

  Laboratory Of Reproductive Biology National Institute For Basic Biology

• Sakaizumi Mitsuru

  Graduate School Of Science And Technology Niigata University

• Sakaizumi Mitsuru

  Graduate School Of Science And Technology Niigata University:department Of Environmental Science Fac

• Tsuchiya Kimiyuki

  Laboratory Of Bioresources Applied Biology Co. Ltd.

• Tsuchiya Kimiyuki

  Department Of Agriculture Tokyo University Of Agriculture

• Nagai Naoko

  Graduate School of Science and Technology, Niigata University

• Nagai Naoko

  Graduate School Of Science And Technology Niigata University

• Takehana Y

  Graduate School Of Science And Technology Niigata University

• Takehana Yusuke

  Graduate School Of Science And Technology Niigata University

• Matsuda M

  Human Serv. Center Aichi Jpn

• Tsuchiya Kimiyuki

  Lab. Of Wild Animals Dep. Of Animal Sciences Fac. Of Agriculture Tokyo Univ. Of Agriculture

• Tsuchiya Kimiyuki

  Exp. Anim. Center Miyazaki Med. Coll.

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