An Automated System for Genome Analysis to Support Microbial Whole-genome Shotgun Sequencing

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概要

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• We developed a semi-automated genome analysis system called GAMBLER in order to support the current whole-genome sequencing project focusing on alkaliphilic Bacillus halodurans C-125. GAMBLER was designed to reduce the human intervention required and to reduce the complications in annotating thousands of ORFs in the microbial genome. GAMBLER automates three major routines : analyzing assembly results provided by genome assembler software, assigning ORFs, and homology searching. GAMBLER is equipped with an interface for convenience of annotation. All processes and options are manipulatable through a WWW browser that enables scientists to share their genome analysis results without choosing computer platforms.

• 2000-03-23

著者

• KUHARA Satoru

  Graduate School of Genetic Resources Technology, Kyushu University

• Kuhara Satoru

  Graduate School Of Genetic Resources Technology Kyushu University

• HORIKOSHI KOKI

  DEEP-STAR Group, Japan Marine Science and Technology Ceter

• Sakiyama Tokuki

  Deep-sea Microorganisms Research Group Japan Marine Science And Technology Center

• TAKAMI Hideto

  Deep-sea Microorganisms Research Group, Japan Marine Science and Technology Center

• OGASAWARA Naotake

  Graduate School of Biological Sciences, Nara Institute of Science and Technology

• KOZUKI Tokio

  Biotechnology Systems Department, Mitsui Knowledge Inc. Ltd.

• DOGA Kosuke

  Biotechnology Systems Department, Mitsui Knowledge Inc. Ltd.

• OHYAMA Akira

  Biotechnology Systems Department, Mitsui Knowledge Inc. Ltd.

• Takami Hideto

  Deep-sea Microorganisms Research Group Japan Marine Science And Technology Center

• Doga Kosuke

  Biotechnology Systems Department Mitsui Knowledge Inc. Ltd.

• Ohyama Akira

  Biotechnology Systems Department Mitsui Knowledge Inc. Ltd.

• Kozuki Tokio

  Biotechnology Systems Department Mitsui Knowledge Inc. Ltd.

• Ogasawara Naotake

  Graduate School Of Biological Sciences Nara Institute Of Science And Technology

• Kuhara Satoru

  Graduate School Of Bioresource And Bioenvironmental Sciences Kyushu University

• Horikoshi Koki

  Deep-sea Microorganisms Research Group Japan Marine Science And Technology Center

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