Complete Genome Sequence of Bradyrhizobium sp. S23321 : Insights into Symbiosis Evolution in Soil Oligotrophs
スポンサーリンク
概要
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Bradyrhizobium sp. S23321 is an oligotrophic bacterium isolated from paddy field soil. Although S23321 is phylogenetically close to Bradyrhizobium japonicum USDA110, a legume symbiont, it is unable to induce root nodules in siratro, a legume often used for testing Nod factor-dependent nodulation. The genome of S23321 is a single circular chromosome, 7,231,841 bp in length, with an average GC content of 64.3%. The genome contains 6,898 potential protein-encoding genes, one set of rRNA genes, and 45 tRNA genes. Comparison of the genome structure between S23321 and USDA110 showed strong colinearity; however, the symbiosis islands present in USDA110 were absent in S23321, whose genome lacked a chaperonin gene cluster (groELS3) for symbiosis regulation found in USDA110. A comparison of sequences around the tRNA-Val gene strongly suggested that S23321 contains an ancestral-type genome that precedes the acquisition of a symbiosis island by horizontal gene transfer. Although S23321 contains a nif (nitrogen fixation) gene cluster, the organization, homology, and phylogeny of the genes in this cluster were more similar to those of photosynthetic bradyrhizobia ORS278 and BTAi1 than to those on the symbiosis island of USDA110. In addition, we found genes encoding a complete photosynthetic system, many ABC transporters for amino acids and oligopeptides, two types (polar and lateral) of flagella, multiple respiratory chains, and a system for lignin monomer catabolism in the S23321 genome. These features suggest that S23321 is able to adapt to a wide range of environments, probably including low-nutrient conditions, with multiple survival strategies in soil and rhizosphere.
- 2012-09-01
著者
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MITSUI Hisayuki
Graduate School of Life Sciences, Tohoku University
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Sato S
Kazusa Dna Res. Inst. Chiba Jpn
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Hanaoka Hideki
Nibb:univ. Adv. Stu.
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SAKAMOTO Kazunori
Graduate School of Horticulture, Chiba University
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ITAKURA MANABU
Graduate School of Life Sciences, Tohoku University
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HARUTA Shin
Graduate School of Agricultural and Life Sciences, the Univesity of Tokyo
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Toyota Koki
Graduate School Of Bio-applications And Systems Engineering Tokyo Univ. Of Agriculture And Technol.
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Masuda Sachiko
Graduate School Of Life Sciences Tohoku University
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Wang Yong
National Institute for Agro-Environmental Sciences
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Morimoto Sho
National Institute for Agro-Environmental Sciences
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OKUBO TAKASHI
Graduate School of Life Sciences, Tohoku University
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Hisamatsu M
Department Of Agricultural Chemistry Faculty Of Bioresources Mie University
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Hisamatsu M
Graduate School Of Life Sciences Tohoku University
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Sakamoto Kazunori
Graduate School Of Horticulture Chiba University
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Futamata Hiroyuki
Department Of Material Science And Chemical Engineering Shizuoka University
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Futamata Hiroyuki
Department Of Ecological Engineering Toyohashi University Of Technology
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Shinozaki Satoshi
Research And Development Center Mayekawa Mfg. Co. Ltd.
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Nakamura Yasukazu
Kazusa Dna Research Institute
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Yokoyama T
Tokyo University Of Agriculture And Technology
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Bao Zhihua
農環研
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Minamisawa K
Graduate School Of Life Sciences Tohoku University
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Hattori Masahira
Graduate School Of Frontier Sciences The Univ. Of Tokyo
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IKUNAGA YOKO
Ibaraki University College of Agriculture
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YAMAMOTO Syuji
Department of Ophtnalmology, Osaka University Medical School
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Yokoyama Tadashi
Faculty Of Agriculture Tokyo University Of Agriculture And Technology
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ANDA Mizue
Graduate School of Life Sciences, Tohoku University
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TERASAWA Kimihiro
Graduate School of Life Sciences, Tohoku University
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Terasawa Kimihiro
Graduate School Of Life Sciences Tohoku University
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Hayatsu Masahito
National Institute For Agro-environmental Sciences
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Aizawa Shin-ichi
Department Of Life Sciences Prefectural University Of Hiroshima:crest Japan Science & Technology
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Minamisawa Kiwamu
Graduate School Of Life Sciences Tohoku Univ.
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Wang Yong
National Inst. For Agro-environmental Sciences
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SAKAI YORIKO
National Institute for Agro-Environmental Sciences
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Sawai Satoru
Department Of Applied Biological Sciences Nihon University
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Yokoyama Tadashi
Institute Of Agriculture Tokyo University Of Agriculture And Technology
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Tokuda Shin-ichi
National Institute of Vegetable and Tea Science
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Hirakawa Hideki
Laboratory For Plant Genome Informatics Department Of Plant Genome Research Kazusa Dna Research Inst
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Toyota Koki
Tokyo Univ. -ag. & Tech. Base
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Okubo Takashi
Graduate School Of Life Sciences Tohoku University
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Takada Hoshino
National Inst. For Agro-environmental Sciences
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Anda Mizue
Graduate School Of Life Sciences Tohoku University
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Saito Akihiro
Department Of Applied Biology And Chemistry Faculty Of Applied Bio-science Tokyo University Of Agric
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Morimoto Sho
National Inst. For Agro-environmental Sciences
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Shimomura Yumi
National Institute for Agro-Environmental Sciences
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OHIGASHI KENTARO
National Institute for Agro-Environmental Sciences
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Toyota Koki
Graduate School Of Bio-applications And Systems Engineering Tokyo University Of Agriculture And Tech
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Mitsui Hisayuki
Graduate School Of Life Science Tohoku University
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Kohara Mitsuyo
Department Of Plant Genome Research Kazusa Dna Research Institute
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Itakura Manabu
Graduate School Of Life Science Tohoku University
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YAMASHITA AKIFUMI
Graduate School of Life Sciences, Tohoku University
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Yamashita Akifumi
Graduate School Of Life Sciences Tohoku University
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AIZU Tomoyuki
Center for Genetic Resource Information, National Institute of Genetics
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Saito Masanori
Field Science Center Graduate School Of Agriculture Science Tohoku University
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Sameshima Saito
Faculty Of Agriculture Shizuoka University
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TSUKUI TAKAHIRO
Graduate School of Life Sciences, Tohoku University
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MAITA HIROKO
Graduate School of Life Sciences, Tohoku University
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OKAMOTO SHINOBU
Database Center for Life Science (DBCLS), Research Organization of Information and Systems (ROIS)
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OSHIMA KENSHIRO
Graduate School of Frontier Sciences, University of Tokyo
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FUJISAWA TAKATOMO
Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems
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HATTORI REIKO
Attic Lab
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NAGASHIMA KENJI
Graduate School of Science and Engineering, Tokyo Metropolitan University
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HATTORI TSUTOMU
Attic Lab
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BAO ZHIHUA
Graduate School of Life Sciences, Tohoku University
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KAJIYA KANEGAE
Database Center for Life Science (DBCLS), Research Organization of Information and Systems (ROIS)
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YOSHINAGA IKUO
Graduate School of Agriculture, Kyoto University
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NAKAO MITSUTERU
Database Center for Life Science (DBCLS), Research Organization of Information and Systems (ROIS)
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KOHARA MITSUYO
Laboratory for Plant Genome Informatics, Kazusa DNA Research Institute
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NIWA RIEKO
National Institute for Agro-Environmental Sciences
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PARK JUNG-HWAN
Graduate School of Agriculture, Kyoto University
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YAMAMOTO SUMIKO
Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems
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AKUTSU TOMOKO
Laboratory for Plant Genome Informatics, Kazusa DNA Research Institute
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NAKAMURA YASUKAZU
Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems
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NAKAHIRA YANAKA
Graduate School of Life and Environment Sciences. University of Tsukuba
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SATO SHUSEI
Graduate School of Life Sciences, Tohoku University
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IKEDA OHTSUBO
Graduate School of Life Sciences, Tohoku University
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SAKAKURA NATSUKO
Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems
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KAMINUMA ELI
Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization for Information and Systems
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Kaminuma Eli
Center For Information Biology And Dna Data Bank Of Japan National Institute Of Genetics Research Organization For Information And Systems
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Ikeda Ohtsubo
Graduate School Of Life Sciences Tohoku University
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Kajiya Kanegae
Database Center For Life Science (dbcls) Research Organization Of Information And Systems (rois)
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Okamoto Shinobu
Database Center For Life Science (dbcls) Research Organization Of Information And Systems (rois)
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Nagashima Kenji
Graduate School Of Science And Engineering Tokyo Metropolitan University
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Nakao Mitsuteru
Database Center For Life Science (dbcls) Research Organization Of Information And Systems (rois)
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Sakakura Natsuko
Center For Information Biology And Dna Data Bank Of Japan National Institute Of Genetics Research Organization For Information And Systems
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Fujisawa Takatomo
Center For Information Biology And Dna Data Bank Of Japan National Institute Of Genetics Research Organization For Information And Systems
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Maita Hiroko
Graduate School Of Life Sciences Tohoku University
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Park Jung-hwan
Graduate School Of Agriculture Kyoto University
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Yamamoto Sumiko
Center For Information Biology And Dna Data Bank Of Japan National Institute Of Genetics Research Organization For Information And Systems
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Saito Akihiro
Department Of Material And Life Science Faculty Of Science And Technology Shizuoka Institute Of Science And Technology
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Aizawa Shin-ichi
Department Of Life Sciences Prefectural University Of Hiroshima
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Tsukui Takahiro
Graduate School Of Life Sciences Tohoku University
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Haruta Shin
Graduate School Of Science And Engineering Tokyo Metropolitan University
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Yamamoto Syuji
Department Of Material Science And Chemical Engineering Shizuoka University
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Minamisawa Kiwamu
Graduate School of Life Science, Tohoku University
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Oshima Kenshiro
Graduate School of Frontier Sciences, The University of Tokyo
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Okubo Takashi
Graduate School of Life Science, Tohoku University
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