Design of Sphingomonad-Detecting Probes for a DNA Array, and Its Application to Investigate the Behavior, Distribution, and Source of Rhizospherous Sphingomonas and Other Sphingomonads Inhabiting an Acid Sulfate Soil Paddock in Kalimantan, Indonesia

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概要

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• Throughout Central and South Kalimantan, Indonesia, strongly acidic soil (pH 2.1–3.7) is widely distributed, and the local acidic soil-tolerant plants, including local rice varieties, often possess sphingomonads in their rhizosphere and rhizoplane. To investigate the behavior of sphingomonads inhabiting the rhizosphere of such acid-tolerant plants, we designed 13 different DNA array probes (each of 72 mer) specific to a group of sphingomonads, using a hypervariable V6 region of the 16S rRNA gene. This DNA array system was used preliminarily for an analysis of microfloral dynamisms, particularly of sphingomonads, in acidic paddock ecosystems, and the results suggest that the acid-tolerant local rice shares rhizospherous sphingomonads with wild Juncus sp., a predominant weed that thrives in acidic paddocks during the off-season for rice farming. This tentative conclusion supports the bio-rationality of the traditional rice farming system with respect to functional rhizobacteria.

• 日本農芸化学会の論文
• 2007-02-23

著者

• Hasegawa Toshihiro

  National Institute for Agro-Environmental Sciences

• PURNOMO ERRY

  Center for Tropical Adverse Soil Studies Natural Resource and Environmental Management Lambung Mangk

• Kitagawa Emiko

  National Inst. Of Advanced Industrial Sci. And Technol. (aist)

• 田原 哲士

  Crest 科学技術振興事業団

• Tahara S

  Department Of Applied Bioscience Faculty Of Agriculture Hokkaido University

• Tahara Satoshi

  Hokkaido Univ. Sapporo Jpn

• Tahara S

  Hokkaido Univ. Sapporo Jpn

• Tahara Satoshi

  Faculty Of Agriculture Hokkaido University

• Tahara Satoshi

  Division Of Applied Bioscience Graduate School Of Agriculture Hokkaido University:crest Japan Scienc

• Tahara Satoshi

  Division Of Applied Bioscience Graduate School Of Agriculture Hokkaido University

• Iwahashi Hitoshi

  National Institute of Advanced Industrial Science and Technology

• HASHIDOKO Yasuyuki

  Division of Applied Bioscience, Graduate School of Agriculture, Hokkaido University

• PURNOMO Erry

  Department of Soil Science, Faculty of Agriculture, Lambung Makrad University

• Takiguchi Soichi

  Division Of Clinical Research National Kyushu Cancer Center

• Hasegawa Toshihiro

  National Inst. Of Agro-environmental Sciences

• Hashidoko Yasuyuki

  Jrdc Plant Ecochemicals Project Eniwa Rbp

• Hashidoko Yasuyuki

  Division Of Applied Bioscience Graduate School Of Agriculture Hokkaido University:crest Japan Scienc

• Hashidoko Yasuyuki

  Division Of Applied Bioscience Graduate School Of Agriculture Hokkaido University

• Hashidoko Yasuyuki

  Jrdc Plant Ecochemicals Project Eniwa Rbp Center Building

• 橋床 泰之

  Graduate School Of Agriculture Hokkaido University

• Tahara S

  Tokyo Metropolitan Inst. Of Gerontology

• Tahara Shoichi

  Redox Regulation Research Group Tokyo Metropolitan Institute Of Gerontology

• Hashidoko Y

  Hokkaido Univ. Sapporo Jpn

• Kitagawa Emiko

  National Institute Of Advanced Industrial Science And Technology (aist)

• Iwahashi Hitoshi

  National Institute Of Advanced Industrial Science And Technology (aist)

• Iwahashi Hitoshi

  National Institute Of Advanced Industrial Scien

• Tahara Satoshi

  Division Of Applaied Bioscience Graduate School Of Agriculture Hokkaido University

• 橋床 泰之

  北大院農応生科

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