Changes in body temperature pattern in vertebrates do not influence the codon usages of α-globin genes
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概要
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Codon usages are known to vary among vertebrates chiefly due to variations in isochore structure. Under the assumption that marked differences exist in isochore structure between warm-blooded and cold-blooded animals, the variations among vertebrates were previously attributed to an adaptation to homeothermy. However, based on data from a turtle species and a crocodile (Archosauromorpha), it was recently proposed that the common ancestors of mammals, birds and extent reptilies already had the "warm-blooded" isochore structure. We determined the nucleotide sequences of α-globin genes from two species of heterotherms, cuckoo (Cuculus canorus) and bat (Pipistrellus abramus), and three species of snakes (Lepidosauromorpha), Naja kaouthia from a tropical terrestrial habitat, Elaphe climacophora from a temperate terrestrial habitat, and Hydrophis melanocephalus from a tropical marine habitat. Our purposes were to assess the influence of differential body temperature patterns on codon usage and GC content at the third position of a codon (GC3), and to test the hypothesis concerning the phylogenetic position at which GC contents had increased in vertebrates. The results of principal component analysis (PCA) using the present data and data for other taxa from GenBank indicate that the primary difference in codon usage in globin genes among amniotes and other vertebrates lies in GC3. The codon usages (and GC3) in α-globin genes from two heterotherms and three snakes are similar to those in α-globin genes from warm-blooded vertebrates. These results refute the influence of body temperature pattern upon codon usages (and GC3) in α-globin genes, and support the hypothesis that the increase in GC content in the genome occurred in the common ancestor of amniotes.
- 日本遺伝学会の論文
- 2002-06-25
著者
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NAKAMURA Hiroshi
Department of Analytical Chemistry, Faculty of Pharmaceutical Sciences, Science University of Tokyo
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Ota Hidetoshi
Tropical Biosphere Research Center University Of The Ryukyus
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Okada Kazuhisa
Department Of Gastroenterology Cancer Institute Hospital Japanese Foundation For Cancer Research
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Okada Kazuhisa
Department Of Biological And Chemical Engineering Faculty Of Engineering Gunma University
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HAMADA Kazuo
Department of Biological and Chemical Engineering, Faculty of Engineering, Gunma University
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HORIIKE Tokumasa
Department of Biological and Chemical Engineering, Faculty of Engineering, Gunma University
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SHINOZAWA Takao
Department of Biological and Chemical Engineering, Faculty of Engineering, Gunma University
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KANAYA Shigehiko
Research and Education Center for Genetic Information, Nara Institute of Science and Technology
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YATOGO Takayuki
Department of Biological and Chemical Engineering, Faculty of Engineering, Gunma University
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Kanaya Shigehiko
Research And Education Center For Genetic Information Nara Institute Of Science And Technology
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Hamada Kazuo
Radiance Ware Co.
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Shinozawa T
Department Of Integrative Bioscience And Biomedical Engineering Graduate School Of Advanced Science
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Shinozawa Takao
Department Of Biological And Chemical Engineering Faculty Of Engineering Gunma University
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Horiike Tokumasa
Department Of Integrated Genetics National Institute Of Genetics
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Okada Kazuhisa
Department Of Bacterial Infections Research Institute For Microbial Disease Osaka University
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Yatogo Takayuki
Department Of Biological And Chemical Engineering Faculty Of Engineering Gunma University
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Nakamura Hiroshi
Department Of Analytical Chemistry Faculty Of Pharmaceutical Sciences Science University Of Tokyo
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Nakamura Hiroshi
Department Of Biology Faculty Of Education Shinshu University
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