Characterization of Herbaspirillum- and Limnobacter-Related Strains Isolated from Young Volcanic Deposits in Miyake-Jima Island, Japan
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概要
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The role of microbes in the early development of ecosystems on new volcanic materials seems to be crucial to primary plant succession but is not well characterized. Here we analyzed the bacterial community colonizing 22-year-old volcanic deposits of the Miyake-jima Island (Japan) using culture-based and 16S rRNA gene clone library methods. The majority of 91 bacterial isolates were placed phylogenetically in two clusters (A and B) of the Betaproteobacteria. Cluster A (82% of isolates) was related to the genus Limnobacter and Cluster B (9%) was affiliated with the Herbaspirillum clade. The clone library analysis supported the predominance of Cluster B rather than Cluster A. Strain KP1-50 of Cluster B was able to grow on a mineral medium under an atmosphere of H_2, O_2, and CO_2 (85:5:10), and characterized by its large-subunit gene of ribulose 1,5-bisphosphate carboxylase/oxygenase (rbcL) and nitrogenase reductase gene (nifH). In contrast, strains of Cluster A did not grow chemolithoautotrophically with H_2, O_2, and CO_2 but increased their cell biomass with the addition of thiosulfate to the succinate medium, suggesting the use of thiosulfate as an energy source. From phenotypic characterization, it was suggested that the Cluster A and B strains were novel species in the genus Limnobacter and Herbaspirillum, respectively.
- 日本微生物生態学会の論文
著者
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OHTA HIROYUKI
Ibaraki University College of Agriculture
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Ohta Hiroyuki
Ibaraki Univ. Coll. Of Agriculture
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Sato Yoshinori
Institute For Global Change Adaptation Science Ibaraki University
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Ohta Hiroyuki
Ibaraki Univ.
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Kamijo Takashi
Graduate School Of Life And Environmental Science University Of Tsukuba
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Sato Yoshinori
Ibaraki Univ., Fac. of Agri.
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Kamijo Takashi
Institute of Agri. & Forestry, Univ. of Tsukuba
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NANBA KENJI
Faculty of Symbiotic System Science, Fukushima University
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LU HONGSHENG
United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology
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FUJIMURA REIKO
Ibaraki University College of Agriculture
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Nanba Kenji
Faculty Of Symbiotic System Science Fukushima University
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Fujimura Reiko
Department Of Bioresource Science Ibaraki University College Of Agriculture
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Lu Hongsheng
United Graduate School Of Agricultural Science Tokyo University Of Agriculture And Technology:ibarak
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Hongsheng Lu
Tokyo Univ. Of Agric. And Tech.:ibaraki Univ. College Of Agric.
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Kamijo Takashi
Institute For Optical Research Kyoiku University
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Tsuruta Kazuto
Ibaraki University College Of Agriculture
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Ohta Hiroyuki
College Of Agriculture Ibaraki University
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Sako Yoshihiko
Laboratory Of Marine Microbiology Division Of Applied Biosciences Graduate School Of Agriculture Kyo
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Nanba Kenji
Faculty of Applied Biological Science, Hiroshima University
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Fujimura Reiko
Ibaraki Univ.
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