Extracting Transcription Regulatory Elements in Dictyostelium Discoideum

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概要

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• Abstract Finding transcription regulatory elements (TREs) is one of the most important tasks in the field of genome informatics. The objective of this research is to extract TREs in DNA sequences of Dictyostelium discoideum (D.discoideum). Extracting characteristic patterns in DNA sequences is important to find TREs. We propose indices (Score M, Score T) to extract characteristic patterns in D.discoideum. Score M is proposed to extract patterns appeared in common region of DNA sequences. Score T is proposed to extract repeated patterns in common region of DNA sequences. Characteristic patterns according to Score M and Score T are extracted from non-transcribed region of Dictyostelium discoideum. The experimental Result shows that Score M and Score T are effective to extract targeted patterns.

著者

• YASUNAGA Moritoshi

  Graduate School of Systems and Information Engineering, University of Tsukuba

• Yoshihara Ikuo

  Department of Computer Science and Systems Engineering, Faculty of Engineering, Miyazaki University

• Yamamori Kunihito

  Department of Computer Science and Systems Engineering, Faculty of Engineering, Miyazaki University

• Yasunaga Moritoshi

  Institute of Information Sciences and Electronics, Tsukuba University

• Yasunaga Moritoshi

  Graduate School Of Systems And Information Engineering University Of Tsukuba

• Yasunaga Moritoshi

  Institute Of Information Sciences And Electronics Tsukuba University

• Yasunaga Moritoshi

  The Institute Of Information Sciences And Electronics University Of Tsukuba

• Yasunaga Moritoshi

  Institute Of Information Science And Electronics University Of Tsukuba

• Onitani Toshiro

  Graduate School Of Engineering University Of Miyazaki

• Yoshihara Ikuo

  Department Of Computer And Science And Systems Engineering Miyazaki University

• Kamimai Yoshiyuki

  Faculty Of Engineering University Of Miyazaki

• Yamamori Kunihito

  Department Of Computer And Science And Systems Engineering Miyazaki University

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