On the Development of an Analysis System for Upstream Sequences in Dictyostelium discoideum Genome
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概要
- 論文の詳細を見る
We present a DNA sequence analyzing system for a cellular slime mold called Dictyostelium discoideum. The upstream sequences may include cis-elements which are involved in the temporal and spatial regulation of transcription. Our goal is to identify the cis-elements with statistic methods. For this purpose, we have developed a distributed system. Its main components are an alignment program based on dynamic programming which estimates candidates for cis-elements on upstream sequences, and a statistical analyzer which checks if the candidate elements have a statistical property. The system supports SOAP and the components can be deployed and collaborate on the web. In this paper, we mainly discuss the system architecture and evaluate its efficiency.
著者
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URUSHIHARA Hideko
Graduate School of Life and Environmental Sciences, University of Tsukuba
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Urushihara Hideko
Graduate School Of Life And Environmental Sciences University Of Tsukuba
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Marin Mircea
Graduate School of Systems and Information Engineering, University of Tsukuba
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Kobayashi Norio
Graduate School of Life and Environmental Sciences, University of Tsukuba
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Tanaka Yoshimasa
Graduate School of Life and Environmental Sciences, University of Tsukuba
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