Application of a Real-time PCR Assay to a Comprehensive Method of Monitoring Harmful Algae
スポンサーリンク
概要
- 論文の詳細を見る
In this study, we developed a comprehensive method for monitoring representative harmful algal bloom (HAB) species in Japan, namely, three dinoflagellates, Cochlodinium polykrikoides, Karenia mikimotoi, Heterocapsa circularisquama, and four raphidophycean flagellates, Chattonella antiqua, C. marina, C. ovata, and Heterosigma akashiwo; this was done by using a real-time PCR assay with primer sets and probes based on species-specific sequences in the D1/D2 region of 28S rRNA genes. For comprehensive monitoring, a DNA extraction protocol using cetyltrimethylammonium bromide (CTAB) was used. In this quantitative PCR assay, specially designed primer sets and probes showed species-specificity and even 1 cell of each harmful alga was detectable. Detection and quantification of HAB species were unaffected by either the growth phase of the algae or the existence of algae other than the target species in the culture. For environmental samples, this real-time PCR assay could be carried out more rapidly and easily, in addition to the similarity of the cell densities estimated by direct counting under a light microscope and by the real-time PCR assay. Moreover, the real-time PCR assay showed a higher sensitivity in seawater samples in which the harmful algae were not detected by direct counting.
著者
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YOSHIDA Takashi
Department of Pharmacognosy, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Oka
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Takao Yoshitake
Department Of Agriculture Kyoto University
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SAKO Yoshihiko
Graduate School of Agriculture, Kyoto University
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Yoshida Takashi
Department Of Agriculture Kyoto University
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Yoshitake Takao
Harmful Algal Bloom Division National Research Institute Of Fisheries And Environment Of Inland Sea
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Miyahara Takahiro
Shallow Sea Research Institute Fisheries Experimental Station Agriculture Forestry And Fisheries Res
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SAKO Yoshihiko
Laboratory of Marine Microbiology, Department of Applied Bioscience, Graduate School of Agriculture,
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Tomaru Yuji
National Res. Inst. Of Fisheries And Environment Of Inland Sea Fisheries Res. Agency
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Sako Yoshihiko
Kyoto Univ. Kyoto
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Sako Yoshihiko
Laboratory Of Marine Microbiology Division Of Applied Biosciences Graduate School Of Agriculture Kyo
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KAMIKAWA RYOMA
Laboratory of Marine Microbiology, Division of Applied Biosciences, Graduate School of Agriculture,
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Oyama Kenichi
Akashiwo Research Institute Of Kagawa Prefecture
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Kamikawa Ryoma
Laboratory Of Marine Microbiology Division Of Applied Biosciences Graduate School Of Agriculture Kyo
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ASAI JUNKO
Laboratory of Marine Microbiology, Division of Applied Biosciences, Graduate School of Agriculture,
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MURATA KEISUKE
Division of Fishery Environment, Kagoshima Perfectual Fisheries Technology and Development Centre
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YOSHIMATSU SADAAKI
Akashiwo Research Institute of Kagawa Prefecture
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Kamikawa Ryoma
Center For Computational Sciences And Institute Of Biological Sciences University Of Tsukuba
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Tomaru Yuji
Harmful Algal Bloom Division National Research Institute Of Fisheries And Environment Of Inland Sea
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Asai Junko
Laboratory Of Marine Microbiology Division Of Applied Biosciences Graduate School Of Agriculture Kyo
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Murata Keisuke
Division Of Fishery Environment Kagoshima Perfectual Fisheries Technology And Development Centre
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Sako Yoshihiko
Laboratory Of Marine Microbiology Department Of Applied Bioscience Graduate School Of Agriculture Ky
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Yoshida Takashi
Laboratory Of Marine Microbiology Graduate School Of Agriculture Kyoto University
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Yoshida Takashi
Dept. Mar. Biosci. Fukui Pref. Univ.
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